Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3563g00053 ATGGAGCTAAGAAATGAGAAGCTAGTTAGGTTTTACGATGATGGTAAACAGAAACCAGAGCCTTCTTCGGAAAAGCCACTGCCAGTATACAGGGTGCATGCAGTCATAAACTCTGAAGGCAAAATTGTGAGTGGTGATAAGAACAAAATCAACCTGAAAATTCCTTCTCTCGGAAAGTTTAGGGTATTCCCAGAAAACCACGAACCATGGAAGAAGAGAATCCTTGATCCTGGAAGTGACATATATTTGCAGTGGAACCGGCTTTTCCTTTGTTCTTGCATTCTGGCTCTATTTGTTGACCCATTGTTTTTCTACTTGCCCTCGGTGGCAAATGATGAAAAGTCAGCGTGTATGGCTACTGATTTGAATATTGGAATTGTAGTGACATGTTTCCGAACATTGGCTGATATTTTCTATCTGCTGAACATGTTCATAAAGTTCAGAACAGCTTATGTATCACCGAGTTCAAGGATTTTTGGAAGGGGTGAGTTAGTCATGGATCCAAGGTTAATTACAACACGGTATTTAAGGTCAAAATTCTTCATAGATCTTGTAGCTACACTGCCTCTTCCTCAGATCATGATCTGGTTTATTATGCCTGCAATTAGAAGCTCTCATGCTGATCACACCAACAATGCTCTTGTACTGATTGTTCTTCTTCAATACGTTCCCAGATTATATCTGATTTTCCCCTTAAGTTCTCAGATTATCAAAGCCACTGGTGTAGTCACAAAGACAGCTTGGGCTGGAGCTGCTTATAATCTTTTACTTTACATGTTGGCTAGCCATGTGTTGGGGGCATCATGGTACTTGTTGTCAATTGAAAGGAATTCCACGTGTTGGAAATCACAATGCAAGAATGAAACTTTCCCCATGAAATGTGTTCTTCAATACTTGGATTGCAGCACTTTAAACGATGATGATCGCATGAAGTGGGTAAACAATACTTCCGTGTTTGATAACTGCAATCCGAATAATGACATCAGTTTCAAGTATGGCATTTTTGGACCTGCAGTTGAAAACAATGTCGTTTCCTCACAGTTTGTAGAGAAGTATCTCTATTGTCTATGGTGGGGCTTGCAAAACTTGAGTTCCTATGGCCAGAATTTGAGTACAAGCACCTTCATTTGGGAAACTACATTTGCCATACTTATAGCTATCCTGGGTCTAGTTTTGTTTGCCCACTTAATTGGAAACATGCAGACATATCTGCAATCTATCACTGTAAGGCTTGAAGAGTGGAGGCTGAAGCGACGTGATACTGAAGAATGGATGAGACACCGTCAACTGCCACAAAATCTAAGAGAACGTGTTCGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGAGGAGTTGATGAAGAAGCTATCTTGCGGGGCCTTCCCTTAGACTTGCGTAGAGATATCCAACGCCACCTTTGCTTGGATCTTGTTCGACGTGTCCCTTTTTTCTCACAAATGGATGATCAATTGCTTGATGCAATATGTGAGAGATTGGTTTCATGTTTGAATATTCAAGGCACTTACATTGTCCGAGAAGGAGATCCTGTCACAGAGATGCTTTTCATCATAAGAGGAAGACTTGAAAGCTCAACTACAAATGGAGGCAGAACAGGTTTCTTTAACTCAATTACATTAAGACCAAGTGATTTCTGTGGAGAAGAGCTTCTAGCATGGGCTTTGCTTCCAAAATCTACTTCCAATTTGCCCTCTTCAACTAGAACAGTGAAAGCCCTCGTTGAAGTGGAAGCCTTTGCACTAAGAGCTGAGGATCTTAAGTTTGTTGCCAATCAGTTTCGACGTCTTCACAGCAAAAAGTTGCAACACACCTTTCGTTTCTACTCTCACCATTGGAGGACTTGGGCAGCCTGCTTCATTCAAGCTGCTTGGAGAAGGTACAAGAAGAAGAAACTAGCGGCAAGCCTTAGTTTAAAGGAATATCAGTCATTTACTTATGATGAACAGATTAATAATGTAATGAGACATGAAGAGGAGAAACTTAGTGCTATGAATTCGAGTGCAAATTCATTAGGTGTCACTATACTTGCCTCAAGATTTGCTGCAAACGCAAGAAGAGGAGCTCAGAGGATTAAGGATCTTGAGATGCCTAAGTTTCAAAAGCCTCAAGATCCAGACTTCTCAGTGGAAGCAGAGGATGATTAG 2163 0.4096 MELRNEKLVRFYDDGKQKPEPSSEKPLPVYRVHAVINSEGKIVSGDKNKINLKIPSLGKFRVFPENHEPWKKRILDPGSDIYLQWNRLFLCSCILALFVDPLFFYLPSVANDEKSACMATDLNIGIVVTCFRTLADIFYLLNMFIKFRTAYVSPSSRIFGRGELVMDPRLITTRYLRSKFFIDLVATLPLPQIMIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERNSTCWKSQCKNETFPMKCVLQYLDCSTLNDDDRMKWVNNTSVFDNCNPNNDISFKYGIFGPAVENNVVSSQFVEKYLYCLWWGLQNLSSYGQNLSTSTFIWETTFAILIAILGLVLFAHLIGNMQTYLQSITVRLEEWRLKRRDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEEAILRGLPLDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSCLNIQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPSDFCGEELLAWALLPKSTSNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKKKLAASLSLKEYQSFTYDEQINNVMRHEEEKLSAMNSSANSLGVTILASRFAANARRGAQRIKDLEMPKFQKPQDPDFSVEAEDD 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3563g00053 720 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Pral3563g00053 720 Gene3D - 89 409 - -
Pral3563g00053 720 Gene3D Jelly Rolls 481 601 IPR014710 -
Pral3563g00053 720 SMART cnmp_10 483 614 IPR000595 -
Pral3563g00053 720 CDD CAP_ED 483 614 IPR000595 -
Pral3563g00053 720 ProSiteProfiles cAMP/cGMP binding motif profile. 483 567 IPR000595 -
Pral3563g00053 720 SUPERFAMILY Voltage-gated potassium channels 77 405 - -
Pral3563g00053 720 SUPERFAMILY cAMP-binding domain-like 413 605 IPR018490 -
Pral3563g00053 720 Pfam Ion transport protein 85 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral3563g00053 720 Gene3D Helix hairpin bin 411 474 - -
Pral3563g00053 720 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Pral3563g00053 720 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 713 - -
Pral3563g00053 720 Pfam Cyclic nucleotide-binding domain 507 594 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3563g00053 Pral-Chr3563 187146 190457 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3563g00053 10 716 Ion Channels AT2G24610 70.236 0.0 1038
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3563g00053 K05391 - gmx:100803334 1215.29