Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3563g00052 ATGGTTGATTGCCAAGCGGTATTTGAGATCAGAATTCATCATAGATCTTTTAGCCACACTCCCCTTCCTCAGATCCTGATTTGGCTTATAATGCCTGCAGTTAAAAGCCCCCGCGCAGACCACTCCAGCAATTCTCTTGTACTGATCATTCTGCTTCAATATTTCCCCAGATTATACTTGATTTTCCCATTAAGTTCTCAGATCGTCAAAGCGGCTGGGGTAGTTACAAAGACAGCTTGGGCCGGAGCAGCTTATAATCTTTTACTTTACATGTTGGCTAGCCATGTTTTGGGAGCATTATGGTATTTGTTTTCGTTTGAAAGGAATGCTACTTGCTGGAAATCTGAATGCAAAAATGAAACTCAATGTATCCTTAAGTACTTGGATTGCAGAACTTCAAACAATGATGATCGCTTAAAGTGGATAAACTCTACTTCTGTGTTTGCTAACTGCAATCCATCAAACAGCGACAGTTTCGAGTTCGGCATTTTTGAACCAGCGGTTCACTATAATGTCAGTTCCATAGAGTTTGTTCATAAGTACGTCTATTGTCTGTGGTGGGGCTTGCAGAATCTGAGCTGCTGTGGCCAGGAATTGATTACGAGCAAGTTCATTGGGGAAACTACATTTTCAATACTCGTATGTATCCTAGGTTTAGTTTTGTTTGCCCATTTGATTGGAAACATGCAGACATATTTGCAATCTATTACTGTGAGAGTGGAGGAATGGAGACTCAAGCGACATGATACTGAAGAGTGGATGAAACACCGCCAACTTCCACAACATTTGAGAGGACGTGTTCGAAGATTTCTTCAATACAAATGGCTTGCAACTCAAGGAACCGATGAGGAATCTATCTTGCGAGGCCTTCCCAAAGACCTGCGTAGAGATATTCAATGTTACCTTTGCTTAGATCTTATTCGACGTGTCCCCTTTTTCTCACAAATGGATGATCAGCTACTGGATGCAATATGTGAGAGATCGGTATTGTTCTTGAGTCCTCAAGGAACTTATGTTGTACGGGAAGGAGATCCAGTGACAGAGATGCTTTTCATAATAAGAGGAAGACTTGAAAGCTCAACCACAAATGGAGGCAGGACAGGCTTCTTCAACTCTATTGTATTGAAACCAGGTGATTTCTGTGGAGGAGAATTACTATCATGGGCGTTGCTTCCCACATCAACATCCACTCTCAATTTGCCTTCTTCTACAAGAACAGTGAAAGCCCTTGTGGAAGTAGAGGCCTTTGCACTGAGAGCAGAAGATCTCAAGTTCGTGGCCAATCAGTTTCGTCGTTTTCACAGCAAGAAACTGCAACATACCTTCCGTTTCTACTCGTACCATTGGAGGACTTGGGCAGCCTGCTTCATTCAGGCTTCTTGGAGAAGGTACAAGAATAGAATGCTGGCAATGAGTTTGAGCGGAGATCAGCCATTTGATGATTTTGATGGAATGGGACATAGCCAGCAAATGCTCACTGCTGTGACTTCAAGTAATACTTCACCGAGCGACCCTGTAGACATATCAGGATTTGGCACAAAATCAAGAAGAGAAGCTCTGAGGATAACGGATATTAAGATGCCTAAGTTACAAAAGCCTAAAGAGCCAGACTTCTCAAAGGAAGCAGAGGACATTTAG 1638 0.4255 MVDCQAVFEIRIHHRSFSHTPLPQILIWLIMPAVKSPRADHSSNSLVLIILLQYFPRLYLIFPLSSQIVKAAGVVTKTAWAGAAYNLLLYMLASHVLGALWYLFSFERNATCWKSECKNETQCILKYLDCRTSNNDDRLKWINSTSVFANCNPSNSDSFEFGIFEPAVHYNVSSIEFVHKYVYCLWWGLQNLSCCGQELITSKFIGETTFSILVCILGLVLFAHLIGNMQTYLQSITVRVEEWRLKRHDTEEWMKHRQLPQHLRGRVRRFLQYKWLATQGTDEESILRGLPKDLRRDIQCYLCLDLIRRVPFFSQMDDQLLDAICERSVLFLSPQGTYVVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSIVLKPGDFCGGELLSWALLPTSTSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRFHSKKLQHTFRFYSYHWRTWAACFIQASWRRYKNRMLAMSLSGDQPFDDFDGMGHSQQMLTAVTSSNTSPSDPVDISGFGTKSRREALRITDIKMPKLQKPKEPDFSKEAEDI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3563g00052 545 SUPERFAMILY cAMP-binding domain-like 241 437 IPR018490 -
Pral3563g00052 545 SMART cnmp_10 312 445 IPR000595 -
Pral3563g00052 545 MobiDBLite consensus disorder prediction 524 545 - -
Pral3563g00052 545 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 538 - -
Pral3563g00052 545 Pfam Cyclic nucleotide-binding domain 334 425 IPR000595 -
Pral3563g00052 545 ProSiteProfiles cAMP/cGMP binding motif profile. 319 382 IPR000595 -
Pral3563g00052 545 FunFam Cyclic nucleotide-gated ion channel 1 310 430 - -
Pral3563g00052 545 SUPERFAMILY Voltage-gated potassium channels 20 234 - -
Pral3563g00052 545 CDD CAP_ED 312 445 IPR000595 -
Pral3563g00052 545 Gene3D Helix hairpin bin 237 303 - -
Pral3563g00052 545 Gene3D - 13 236 - -
Pral3563g00052 545 Gene3D Jelly Rolls 310 432 IPR014710 -
Pral3563g00052 545 Pfam Ion transport protein 29 240 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3563g00052 Pral-Chr3563 182055 184886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3563g00052 21 539 Ion Channels AT2G24610 65.121 0.0 718
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3563g00052 K05391 - gmx:100803334 784.637