Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00122 ATGAGTAATCTGGTAGGCAAAGATATCCCAGAGATGAGCGACTGTTTGGTGGTGTTCATTACGATTCTTTCATTATTGTTGGATGTGCAATCCCAGGGAATACCAGAGAGCATGCAAGATATGCCTGAAACCATCCATCCCAGCAAAGGAATTATAATAGCAATCCTCACCGTTATGTTTGCCATATCATTTCTACTTCTGGCATATGTAAAGTTCTGTAAAAGCCGCTCCGTTCAGTCTCGGAACTTCGATATGAACAATCCAGGAGCAAGTCGATCAGGGTCAAGATATTCCGGGATAGACAAACAAGTAATCGAAGCACTGCCGTTTTTCAAGTTCTCTTCGCTCAAGGGGTCAAAAGAAGGCCTGGAATGTGCCGTTTGCCTGTCAAAATTCGACGACGCTGAGGTTCTTAGGTTGCTGCCCAAGTGTAAGCATGCTTTCCACATGAATTGCATCGACAAGTGGCTCGAATGTCACTCGACCTGCCCTCTTTGCAGGTACAAGGTTGTCCTTGGGGACATAAAGACATTCAATTCCTCCATCAGCTCCAGGTTCCTTCGAGTTCCTTCCAACATAAACGAAGTCCCCGATCTCGAAATCTTCGTGCAGAGGGAACAATCAAACCAGGGCTCTCACATATTTAACCACTGGAAACCTGCGCACAGGCTCAATCACAGAATAGTCATATCCGATGTTACTACGAGGAGCAGGTGGAGTGATCTTAATTCCTCGGACTTGCTGTCGTTGAATTCTGAGATCCTCAGTGCTATGTCAAGCGCGACATTCCCTGCTTCCAACGAGGAAGATAACTCGTTTACGCTGCTGACTGCTCCAGGGGAGAAGAGATCCATGTCGGAGATTGCCAACGTGGCGAGATTTGCAGAAACCAGGGTGGAGGACAATGAGAGGGAAGAGAGAGTGAGGAGGATTTGGTTGCCGATTGTGGAGCGAACAGTGCAATGGTTTGCGAGCCGAGAGAGCAGCTCGACAGAGCCGAAGCACAAAGGATTGGCTTCAAATGTTTGA 1029 0.4742 MSNLVGKDIPEMSDCLVVFITILSLLLDVQSQGIPESMQDMPETIHPSKGIIIAILTVMFAISFLLLAYVKFCKSRSVQSRNFDMNNPGASRSGSRYSGIDKQVIEALPFFKFSSLKGSKEGLECAVCLSKFDDAEVLRLLPKCKHAFHMNCIDKWLECHSTCPLCRYKVVLGDIKTFNSSISSRFLRVPSNINEVPDLEIFVQREQSNQGSHIFNHWKPAHRLNHRIVISDVTTRSRWSDLNSSDLLSLNSEILSAMSSATFPASNEEDNSFTLLTAPGEKRSMSEIANVARFAETRVEDNEREERVRRIWLPIVERTVQWFASRESSSTEPKHKGLASNV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00122 342 CDD RING-H2_EL5-like 124 167 - -
Pral3561g00122 342 FunFam RING-H2 finger protein ATL43 100 174 - -
Pral3561g00122 342 SUPERFAMILY RING/U-box 104 172 - -
Pral3561g00122 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 36 327 - -
Pral3561g00122 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 172 IPR013083 -
Pral3561g00122 342 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Pral3561g00122 342 Pfam Ring finger domain 124 167 IPR001841 -
Pral3561g00122 342 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00122 Pral-Chr3561 730819 732473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00122 35 330 C3H Transcription Factor Family AT2G20030 38.764 8.02e-73 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00122 K10664 - gmx:100816668 341.273