Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00098 ATGGCAGAGCTGGAATGGCTTTCGACGGTGGTGGATGAATCATTTTCAAGCGAGGACCTGCAGAAACTGCAGCTGATATCTGGTATAAAAGCCCGTAACGACGTCGAAACATCCGAAATCATTCAGGAATTCCAGGCCGAAACCAACCGGAGCGTCGTCAACAGCCCCATATTCAACACAGAAGTCTCGGTTCCGGCCAAAGCTCGCAGCAAGCGCTCACGTGGCTCTCCATGCAACTGGACCTCTCGCCTCTTCCTCCTTTCTCCGTCCCCATCTCCATCGCCATCACTATCCTCCACCTCATCTTCCTCAGATCCCGACGCCATCCTTTCCACCGCAAAGAAACCAGGGAAGGCCGCGCCAAGGAGGAAGGACAGCGGCGGCGAGGGCCGCAAGTGCCTGCATTGTGCCACAGATAAGACGCCGCAATGGCGGACCGGGCCCATGGGCCCCAAAACGCTTTGCAACGCGTGCGGGGTGAGGTACAAGTCAGGGCGGCTGGTGCCAGAATACCGGCCGGCGGCGAGCCCAACGTTCGTGCTGACCAAGCATTCAAACTCACACCGGAAGGTGATGGAACTCCGACGCCAGAAGGAAATGCAGCAGCAGCAGCAGCATCATCAGTTTCTGCAACATCCGAATATGATGTTTGAGTTTCATGTGTCCAATGGGGACGATTACTTGATTCATCAACACCTCGGACCTGACTTCAGGCAGCTCATTTAG 726 0.5579 MAELEWLSTVVDESFSSEDLQKLQLISGIKARNDVETSEIIQEFQAETNRSVVNSPIFNTEVSVPAKARSKRSRGSPCNWTSRLFLLSPSPSPSPSLSSTSSSSDPDAILSTAKKPGKAAPRRKDSGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMQQQQQHHQFLQHPNMMFEFHVSNGDDYLIHQHLGPDFRQLI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00098 241 ProSitePatterns GATA-type zinc finger domain. 133 158 IPR000679 GO:0006355|GO:0043565
Pral3561g00098 241 Gene3D - 128 210 IPR013088 GO:0006355|GO:0008270
Pral3561g00098 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 128 191 - -
Pral3561g00098 241 FunFam GATA transcription factor 122 208 - -
Pral3561g00098 241 SMART GATA_3 127 177 IPR000679 GO:0006355|GO:0043565
Pral3561g00098 241 PANTHER GATA TRANSCRIPTION FACTOR 3 205 - -
Pral3561g00098 241 PIRSF Txn_fac_GATA_plant 1 222 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pral3561g00098 241 ProSiteProfiles GATA-type zinc finger domain profile. 127 163 IPR000679 GO:0006355|GO:0043565
Pral3561g00098 241 CDD ZnF_GATA 132 179 IPR000679 GO:0006355|GO:0043565
Pral3561g00098 241 MobiDBLite consensus disorder prediction 118 133 - -
Pral3561g00098 241 MobiDBLite consensus disorder prediction 89 109 - -
Pral3561g00098 241 MobiDBLite consensus disorder prediction 89 133 - -
Pral3561g00098 241 Pfam GATA zinc finger 133 166 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00098 Pral-Chr3561 646089 647122 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00098 3 241 C2C2-Gata Transcription Factor Family AT5G25830 56.977 6.35e-86 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral3561g00098 GATA 1.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00098 - - qsa:O6P43_015488 293.893