Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00063 ATGGAACTCTGTGAACATGATCATTTTTTGGAAGAATTACTGGCTGTGAGAAGGGAAACATTGGACACCATCCCATCAGAATCAAACCAGTTCTTCTCTAATGGCTGGGGTTTTGATTGTTTTAATCAAAACTCTCTACCTTTTCTTCCAAACTCTTCCTGTCAAGAAATTCCTCAGAGTTACCACAACAACAACTTCGCCTTCAATGAAATCTACAGTTCCTTACTTGATGAATTCTCTGTTCCCCAGAATGTTGATTCATCTTCTTCATCCTATAACGTTCTTGATACTCCAATTATGGGTCAAGAAGATTATCGATTGTCCATGATGGAAGATTTGGAGGATCCGGGTTTGCTTGGGGATGAACTTCAGAGTTTGGACCTGCAAACCCCATGCAAGATAGAGCCAAGCCACTCCCCAGAAATGCCAATTTTCAACATGGGCGATGCGTCTTTGGAAAGAAAGAATCGAGCAAAGAGGCTTCAGGGCCAACCCTCCAAGAATTTAATGGCTGAGAGGAGAAGGAGAAAGAGGTTGAACGATCGCCTTTCAATGCTGAGGTCAATCGTCCCCAAGATAAGCAAGATGGACAGAACATCTATCCTTGGAGACACTATAGATTACATGAAAGAACTCTTGGAGAAGATTAACAAATTGCAACAAGAATTGGAGGTGGATTCAAACATCGGAGGCATTTTGAAGGATGAAAAGCAAAATGAAATCTTGGTGAGAAATACACCCAAGTTTGAAGTGAAGAGGAAGAATGAGGATACACAGATTGAAATTTGCTGTGCAGGAAAGCCAGGATTGTTGCAATCTACAATGAACACTTTGGAAGCATTTGGTCTTGAGATTGAACAGTGTGTTATAAGTTGTTTCAATGATTTCACTGTGCAGGCTTCTTGCTCAGATGAAATGGAGCAGAGGAGAGTACTGAGTTGTGAAGATATAAAGCAAGCACTATTTAGGAGCGCAGGGTATGGGGGAAGATGCTTGTAG 999 0.4144 MELCEHDHFLEELLAVRRETLDTIPSESNQFFSNGWGFDCFNQNSLPFLPNSSCQEIPQSYHNNNFAFNEIYSSLLDEFSVPQNVDSSSSSYNVLDTPIMGQEDYRLSMMEDLEDPGLLGDELQSLDLQTPCKIEPSHSPEMPIFNMGDASLERKNRAKRLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINKLQQELEVDSNIGGILKDEKQNEILVRNTPKFEVKRKNEDTQIEICCAGKPGLLQSTMNTLEAFGLEIEQCVISCFNDFTVQASCSDEMEQRRVLSCEDIKQALFRSAGYGGRCL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00063 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 212 IPR011598 GO:0046983
Pral3561g00063 332 Gene3D - 152 227 IPR036638 GO:0046983
Pral3561g00063 332 Pfam Helix-loop-helix DNA-binding domain 169 212 IPR011598 GO:0046983
Pral3561g00063 332 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 70 327 - -
Pral3561g00063 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 167 225 IPR036638 GO:0046983
Pral3561g00063 332 SMART finulus 169 218 IPR011598 GO:0046983
Pral3561g00063 332 Coils Coil 202 229 - -
Pral3561g00063 332 CDD ACT_UUR-ACR-like 258 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00063 Pral-Chr3561 382143 384242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00063 144 332 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 63.021 6.86e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3561g00063 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00063 - - gmx:100814388 463.766