Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00057 ATGCTGAAAGTGAATTCAATTCACTCGTCAGTTATCAGTACGGTTGCGCAGGCATTCTTGCTATTAGGGTTTACTGGTATGGGAAGAGGCAAGATCGTCATAAGGCGAATCGACAATTCGACGAGCCGGCAGGTAACTTTCTCGAAGCGAAGGAATGGTTTACTAAAGAAGGCCAAGGAGCTGGCAATACTGTGCGACGCTGAGGTCGGAGCCATCATCTTCTCCAGCACTGGTAAACTCTACGATTTCGCTAGCACCAGGCAAATGATGGGAGAAGAGCTGTCAAGTTTGACTATAAAAGAATTACAGGGTTTGGAAAGCCAAATGGAAATTAGCCTTCGGGGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACAAGAACTAAACCGAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGTAAACCTACTTCGTCAAGAAAACATAGAATTAAATAAAAAGGTTTATGAAACAAGATATGGGAGCGCAACAAACAGAAACTCTGTTCTTATGAATGGTCTGGGCATAAGAGAGGACTTGCAAGTTCCTGTAAATCTCCAACTCAGCCAGCCAGAGCGATAA 606 0.4274 MLKVNSIHSSVISTVAQAFLLLGFTGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGAIIFSSTGKLYDFASTRQMMGEELSSLTIKELQGLESQMEISLRGVRMKKDQLLMNEIQELNRKGSLIHQENVELYKKVNLLRQENIELNKKVYETRYGSATNRNSVLMNGLGIREDLQVPVNLQLSQPER 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00057 201 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Pral3561g00057 201 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 143 - -
Pral3561g00057 201 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Pral3561g00057 201 SUPERFAMILY SRF-like 28 90 IPR036879 GO:0003677|GO:0046983
Pral3561g00057 201 Coils Coil 142 162 - -
Pral3561g00057 201 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Pral3561g00057 201 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Pral3561g00057 201 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Pral3561g00057 201 Gene3D - 39 102 IPR036879 GO:0003677|GO:0046983
Pral3561g00057 201 Pfam K-box region 85 149 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3561g00057 201 ProSiteProfiles K-box domain profile. 38 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3561g00057 201 CDD MADS_MEF2_like 28 86 IPR033896 GO:0000977|GO:0045944
Pral3561g00057 201 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00057 Pral-Chr3561 317312 329269 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00057 27 201 MADS-box Gene Family AT2G22630 49.123 3.18e-61 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3561g00057 K-box 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00057 K09264 - gmx:100812413 264.618