Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00056 ATGCTGAAAGTGAATTCAATTCACTCGTCAGTTATCAGTACGGTTGCGCAGGCATTCTTGCTATTAGGGTTTACTGGTATGGGAAGAGGCAAGATCGTCATAAGGCGAATCGACAATTCGACGAGCCGGCAGGTAACTTTCTCGAAGCGAAGGAATGGTTTACTAAAGAAGGCCAAGGAGCTGGCAATACTGTGCGACGCTGAGGTCGGAGCCATCATCTTCTCCAGCACTGGTAAACTCTACGATTTCGCTAGCACCAGCATGAAATCAGTGATTGATCGATACAACAAAGCTAAAGAAGCTCAACATCCTCATCCAGGGAGCTCAACGTCTGAAGTGAAGTTTTGGCAAACGGAGGCAGCAATGTTAAGGCAACAATTGCAAAACTTGCAAGAAAATCACCGGCAAATGATGGGAGAAGAGCTGTCAAGTTTGACTATAAAAGAATTACAGGGTTTGGAAAGCCAAATGGAAATTAGCCTTCGGGGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACAAGAACTAAACCGAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGTTTATGAAACAAGATATGGGAGCGCAACAAACAGAAACTCTGTTCTTATGAATGGTCTGGGCATAAGAGAGGACTTGCAAGTTCCTGTAAATCTCCAACTCAGCCAGCCAGAGCGATAA 708 0.4364 MLKVNSIHSSVISTVAQAFLLLGFTGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGAIIFSSTGKLYDFASTSMKSVIDRYNKAKEAQHPHPGSSTSEVKFWQTEAAMLRQQLQNLQENHRQMMGEELSSLTIKELQGLESQMEISLRGVRMKKDQLLMNEIQELNRKGSLIHQENVELYKKVYETRYGSATNRNSVLMNGLGIREDLQVPVNLQLSQPER 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00056 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 27 187 - -
Pral3561g00056 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 36 83 IPR002100 GO:0003677|GO:0046983
Pral3561g00056 235 CDD MADS_MEF2_like 28 103 IPR033896 GO:0000977|GO:0045944
Pral3561g00056 235 PRINTS MADS domain signature 49 64 IPR002100 GO:0003677|GO:0046983
Pral3561g00056 235 PRINTS MADS domain signature 29 49 IPR002100 GO:0003677|GO:0046983
Pral3561g00056 235 PRINTS MADS domain signature 64 85 IPR002100 GO:0003677|GO:0046983
Pral3561g00056 235 ProSiteProfiles MADS-box domain profile. 27 87 IPR002100 GO:0003677|GO:0046983
Pral3561g00056 235 Pfam K-box region 109 197 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3561g00056 235 SUPERFAMILY SRF-like 28 105 IPR036879 GO:0003677|GO:0046983
Pral3561g00056 235 Gene3D - 39 106 IPR036879 GO:0003677|GO:0046983
Pral3561g00056 235 ProSiteProfiles K-box domain profile. 113 203 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3561g00056 235 FunFam MADS-box transcription factor MADS-MC 39 110 - -
Pral3561g00056 235 Coils Coil 113 140 - -
Pral3561g00056 235 SMART madsneu2 27 86 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00056 Pral-Chr3561 317312 329269 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00056 27 234 MADS-box Gene Family AT4G37940 64.286 1.32e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3561g00056 K-box 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00056 K09264 - gmx:100778970 331.257