Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00052 ATGTCGACCCCAGGGGTTCGGTGGCATCTTCAAGGTCGTCATGTGGTGATGGATAATGGCATACTCCAAGTTACCTTATCAAACCCTGAGGGAATTGTTACCGGGATTCGATATAATGGTGTCGACAATTTGCTTGAGGTCCTTAACAATGAGAATAATCGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGGACGTGTTTTGAAGTTATTGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACACGAATGTGGGAACCTTCTCTTGAGGGGAAGTTTGTTCCCTTAAACATTGATAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAGCACTTAGCTGGATGGCCGGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTGAGAAAAGACAAGTTTAATTACATGGCTATAGAAGACAGTCGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTACCAGGAAGATGCCAGCCCTTGGGCTATCCTGAGGCTGTCCTGCTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATGTATTAACATGAAAAATCAGGTCCATGGGTGGATATCTTTCAACCCACCGGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTAGATGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATTTATTTATCTTAATTCTGGATCAATTGGTGATGACCCACTCTGGCTCTGGGAGGATGCAAAGATACAGATGACGACTGAAGTCCAAAATTGGCCGTATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTAACATTAGTGGTAGGCTAAATGTGTTAGACAGGTGCATCAGCACAGATTTGATCCCAGCAACTGGTGCTTATGTTGGTCTTGCCCTACCGGGTGAGGCAGGGTCATGGCAAAGAGAATGCAAGGGCTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACCATTAAGAATGTACGTCCAGGGGACTACAACCTTTATGCTTGGGTCCCTGGTTTTATTGGGGACTACAGATTTGACGATCTGATGAGGATAGATTCAGGTTCTTATATCGAATTGGGTGAAATTGTGTATGAGCCCCCAAGGGATGGACCCACGCTGTGGGAAATAGGCATTCCCGATAGATCTGCTGCAGAATTTTACATTCCTGATCCAAATCCGCTTCTCGTCAATAGGCTTTTTGTCAACCATCCAGACAGGTTCAGGCAGTATGGACTGTGGGACAGGTATACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTCGGTGCTAGTGATTATTCCAAAAACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAGGAGGATAACACTCTTCAAGGTACAACTTGGCAAATTAAGTTTGATCTCTGTAATGTTGCTCAGGGAAGTACATATAAACTAAGAGTTGCAATTGCATCTGCAACGTTAGCCGAGGTGCAGATTCGAATAAATGATCCAAATGCAAAGCGTCCCCTCTTTACCACTGGATTAATAGGAAGGGACAACTCAGTTGCAAGACATGGAATTCATGGGCTCTATCGGCTGTACCATGTGAATGTACCAGGTGCTGCTCTTGTTGATGGCATAAACACTATATTTTTAACGCAACCAAGATGCAACAGCCCTTTTCAGGGAATCATGTATGATTATATTCGTTTGGAAGGCCCTCCTTGTTTTTAG 1905 0.4352 MSTPGVRWHLQGRHVVMDNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNNENNRGYWDLVWSAPGSKGIFDVIKGTCFEVIVQNEEQVELSFTRMWEPSLEGKFVPLNIDKRFIMLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAIEDSRQRIMPLPDDRLPGRCQPLGYPEAVLLVNPKNPQLKGEVDDKYQYSCINMKNQVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRCGEPWKKVFGPVFIYLNSGSIGDDPLWLWEDAKIQMTTEVQNWPYFFPASEDFLKSDQRGNISGRLNVLDRCISTDLIPATGAYVGLALPGEAGSWQRECKGYQFWTRADENGFFTIKNVRPGDYNLYAWVPGFIGDYRFDDLMRIDSGSYIELGEIVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPLLVNRLFVNHPDRFRQYGLWDRYTELYPDADLIYTVGASDYSKNWFFAQVPRKKEDNTLQGTTWQIKFDLCNVAQGSTYKLRVAIASATLAEVQIRINDPNAKRPLFTTGLIGRDNSVARHGIHGLYRLYHVNVPGAALVDGINTIFLTQPRCNSPFQGIMYDYIRLEGPPCF 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00052 634 SUPERFAMILY Galactose mutarotase-like 14 296 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral3561g00052 634 Pfam Polysaccharide lyase family 4, domain II 354 426 IPR029413 -
Pral3561g00052 634 Pfam Polysaccharide lyase family 4, domain III 440 628 IPR029411 -
Pral3561g00052 634 Gene3D - 8 305 IPR014718 GO:0030246
Pral3561g00052 634 Pfam Rhamnogalacturonate lyase family 13 200 IPR010325 -
Pral3561g00052 634 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 632 - -
Pral3561g00052 634 FunFam Rhamnogalacturonate lyase B 328 427 - -
Pral3561g00052 634 CDD RGL4_C 442 629 - -
Pral3561g00052 634 Gene3D - 438 629 - -
Pral3561g00052 634 SUPERFAMILY Starch-binding domain-like 331 411 IPR013784 GO:0030246
Pral3561g00052 634 CDD RGL4_N 6 293 - -
Pral3561g00052 634 CDD RGL4_M 331 430 IPR029413 -
Pral3561g00052 634 Gene3D - 328 412 - -
Pral3561g00052 634 SUPERFAMILY Galactose-binding domain-like 437 629 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00052 Pral-Chr3561 300177 305781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00052 1 633 Polysaccharide Lyase AT1G09910 71.564 0.0 951
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00052 K18195 - gmx:100814185 1149.04