Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00050 ATGTCGACCCCAGGGGTTCGGTGGCATCTTCAAGGTCGTCATGTGGTGATGGATAATGGCATACTCCAAGTTACCTTATCAAACCCTGAGGGAATTGTTACCGGGATTCGATATAATGGTGTCGACAATTTGCTTGAGGTCCTTAACAATGAGAATAATCGAGGGATAAAAGGGACGTGTTTTGAAGTTATTGTTCAAAATGAGGAACAGGTGGAGCTTTCATTCACACGAATGTGGGAACCTTCTCTTGAGGGGAAGTTTGTTCCCTTAAACATTGATAAAAGATTCATAATGCTCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAGCACTTAGCTGGATGGCCGGATTTTGATATTGGTGAAACGAGGATTACTTTCAAGCTGAGAAAAGACAAGTTTAATTACATGGCTATAGAAGACAGTCGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTACCAGGAAGATGCCAGCCCTTGGGCTATCCTGAGGCTGTCCTGCTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATGTATTAACATGAAAAATCAGGTCCATGGGTGGATATCTTTCAACCCACCGGTGGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTTAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTAGATGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTATTTATTTATCTTAATTCTGGATCAATTGGTGATGACCCACTCTGGCTCTGGGAGGATGCAAAGATACAGATGACGACTGAAGTCCAAAATTGGCCGTATTTTTTCCCAGCTTCAGAGGATTTCTTGAAGTCAGATCAACGGGGTAACATTAGTGGTAGGCTAAATGTGTTAGACAGGTGCATCAGCACAGATTTGATCCCAGCAACTGGTGCTTATGTTGGTCTTGCCCTACCGGGTGAGGCAGGGTCATGGCAAAGAGAATGCAAGGGCTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTACCATTAAGAATGTACGTCCAGGGGACTACAACCTTTATGCTTGGGTCCCTGGTTTTATTGGGGACTACAGATTTGACGATCTGATGAGGATAGATTCAGGTTCTTATATCGAATTGGGTGAAATTGTGTATGAGCCCCCAAGGGATGGACCCACGCTGTGGGAAATAGGCATTCCCGATAGATCTGCTGCAGAATTTTACATTCCTGATCCAAATCCGCTTCTCGTCAATAGGCTTTTTGTCAACCATCCAGACAGGTTCAGGCAGTATGGACTGTGGGACAGGTATACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTCGGTGCTAGTGATTATTCCAAAAACTGGTTTTTCGCTCAGGTTCCCAGAAAGAAGGAGGATAACACTCTTCAAGGTACAACTTGGCAAATTAAGTTTGATCTCTGTAATGTTGCTCAGGGAAGTACATATAAACTAAGAGTTGCAATTGCATCTGCAACGTTAGCCGAGGTGCAGATTCGAATAAATGATCCAAATGCAAAGCGTCCCCTCTTTACCACTGGATTAATAGGAAGGGACAACTCAGTTGCAAGACATGGAATTCATGGGCTCTATCGGCTGTACCATGTGAATGTACCAGGTGCTGCTCTTGTTGATGGCATAAACACTATATTTTTAACGCAACCAAGATGCAACAGCCCTTTTCAGGGAATCATGTATGATTATATTCGTTTGGAAGGCCCTCCTTGTTTTTAG 1854 0.4342 MSTPGVRWHLQGRHVVMDNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNNENNRGIKGTCFEVIVQNEEQVELSFTRMWEPSLEGKFVPLNIDKRFIMLRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAIEDSRQRIMPLPDDRLPGRCQPLGYPEAVLLVNPKNPQLKGEVDDKYQYSCINMKNQVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRCGEPWKKVFGPVFIYLNSGSIGDDPLWLWEDAKIQMTTEVQNWPYFFPASEDFLKSDQRGNISGRLNVLDRCISTDLIPATGAYVGLALPGEAGSWQRECKGYQFWTRADENGFFTIKNVRPGDYNLYAWVPGFIGDYRFDDLMRIDSGSYIELGEIVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPLLVNRLFVNHPDRFRQYGLWDRYTELYPDADLIYTVGASDYSKNWFFAQVPRKKEDNTLQGTTWQIKFDLCNVAQGSTYKLRVAIASATLAEVQIRINDPNAKRPLFTTGLIGRDNSVARHGIHGLYRLYHVNVPGAALVDGINTIFLTQPRCNSPFQGIMYDYIRLEGPPCF 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00050 617 Gene3D - 311 395 - -
Pral3561g00050 617 Gene3D - 421 612 - -
Pral3561g00050 617 Pfam Rhamnogalacturonate lyase family 13 183 IPR010325 -
Pral3561g00050 617 Pfam Polysaccharide lyase family 4, domain II 337 409 IPR029413 -
Pral3561g00050 617 FunFam Rhamnogalacturonate lyase B 311 410 - -
Pral3561g00050 617 SUPERFAMILY Galactose-binding domain-like 420 612 IPR008979 -
Pral3561g00050 617 CDD RGL4_C 425 612 - -
Pral3561g00050 617 SUPERFAMILY Starch-binding domain-like 314 394 IPR013784 GO:0030246
Pral3561g00050 617 SUPERFAMILY Galactose mutarotase-like 14 279 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral3561g00050 617 CDD RGL4_M 314 413 IPR029413 -
Pral3561g00050 617 Gene3D - 8 290 IPR014718 GO:0030246
Pral3561g00050 617 CDD RGL4_N 6 276 - -
Pral3561g00050 617 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 615 - -
Pral3561g00050 617 Pfam Polysaccharide lyase family 4, domain III 423 611 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00050 Pral-Chr3561 300177 305781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00050 1 616 Polysaccharide Lyase AT1G09910 69.510 0.0 912
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00050 K18195 - gmx:100814185 1101.27