Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00049 ATGGCGCTAACAGGAGTGCACCTGCTTATTGAAGATAGACATGTTGTGATTGACAATGGCATACTAAAGGTCACGTTGTCAAATCCTGAGGGAATCGTCACTGGAATAGAATATAATGGCATCGACAACTTGCTCGAATATCAGAACGAGGAATCTAATAGAGGGTACTGGGATCTTGTGTGGAGCTCACCGACAAGTCCCGGAACGAGTGGAACATTTGATGTCATAAGGGGAACCAATTTTAAAGTGATAGTGGAAAACGAACAACAAGTTGAGTTGTCCTTCACAAGAACGTGGGATGCCTCACTTGAAGGCAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGTGTCGCGGTTGTTCTGGCTTCTACTCCTATGGTATTTACGAACACTTAGATGACTGGCCCGCTTTCAATCTCGACGAAACAAGAATTGCTTTCAAGCTCAGCAGAGAAAAGTTTCATTACATGGCAATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGGTGACCGAAACCCACCGAGAGGTCAACCCCTTGCTTATCCTGAGGCTGTTCTTCTTGTTAATCCTGTCGAGCCTGAATTGAAAGGAGAGGTGGACGACAAGTACCAATATTCATGCGACAACAAAGATAGCAAGGTGCATGGGTGGATCTGCACCGATCCGGCGGTAGGATTCTGGCTAATAACTCCCAGCAACGAGTTCCGATCCGGCGGACCCCTCAAGCAAAACCTGACTTCCCATGTGGGACCCACCACTCTTGCGGTGTTTCTAAGCGCTCATTATAGCGGAGAAGATCTGGTGCCAAAATTCAAAGCTGGCGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAATGGAGACAACCTATATAATAAGCTATGGGAAGACGCTAAACTTCAGATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTGAAGTGGGACGAACGTGGCAATGTCAATGGTAGACTATTCGTCCGGGACAGTTATGTTGGAGATGACAATATCTCAGCAAAAGGGGCTTATGTTGGCTTGGCTCCACCAGGAGACGCTGGATCATGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCCAAAGCAGACGATGAGGGATATTTCTCCATCAGCAATATACGCCCCGGTGACTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGTGATTATAGATATGATGTGGTTATGAACATAACTCCAGGTTGTTACATAGTCGTAGGTGACCTTGTGTATGAACCTCCTAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGCACAGCTGCTGAGTTTTATGTTCCTGATCCCAATCCCAAATATATCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGACAGTATGGGTTATGGGAGAGATTTGCGGAGTTATACCCTGACAAAGACTTGATCTACACAGTTGGTGTTAGCGACTACGCCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACCACGTGGCAAATCAAGTTCAAACTGGACAAAGTGAACAAGAGAAGTTTCTATAAACTTCGCATAGCTCTGGCATCAGCAACATTTTCTGAACTGCAGGTTCGAGTTAATGACCCAAAAGCACCTCGTCCTCTGTTTTCTAGTGGGTTGATAGGGAGGGATAACTCCATTGCTAGGCATGGGATTCATGGGCTGTATTGGCTTTTCACTGTGGACATAATAGGTGCTCGACTCGTGGAAGGAGATAATACCATCTTTTTGACTCAGTCAAGAGGCAGTGGCCCATTTCAGGGCATTATGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTGCTTCCGACGACCAGATTTGA 1935 0.4465 MALTGVHLLIEDRHVVIDNGILKVTLSNPEGIVTGIEYNGIDNLLEYQNEESNRGYWDLVWSSPTSPGTSGTFDVIRGTNFKVIVENEQQVELSFTRTWDASLEGKLVPLNIDKRFIMCRGCSGFYSYGIYEHLDDWPAFNLDETRIAFKLSREKFHYMAMADNRQRNMPLPGDRNPPRGQPLAYPEAVLLVNPVEPELKGEVDDKYQYSCDNKDSKVHGWICTDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNGDNLYNKLWEDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLFVRDSYVGDDNISAKGAYVGLAPPGDAGSWQRECKNYQFWAKADDEGYFSISNIRPGDYNLYAWVPGFIGDYRYDVVMNITPGCYIVVGDLVYEPPRDGPTLWEIGIPDRTAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERFAELYPDKDLIYTVGVSDYAKDWFFAQVTRKKDDNTYQGTTWQIKFKLDKVNKRSFYKLRIALASATFSELQVRVNDPKAPRPLFSSGLIGRDNSIARHGIHGLYWLFTVDIIGARLVEGDNTIFLTQSRGSGPFQGIMYDYIRLEGPPSSASDDQI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00049 644 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
Pral3561g00049 644 Gene3D - 8 313 IPR014718 GO:0030246
Pral3561g00049 644 Gene3D - 334 426 - -
Pral3561g00049 644 Pfam Rhamnogalacturonate lyase family 11 203 IPR010325 -
Pral3561g00049 644 CDD RGL4_C 446 633 - -
Pral3561g00049 644 SUPERFAMILY Galactose-binding domain-like 441 633 IPR008979 -
Pral3561g00049 644 Pfam Polysaccharide lyase family 4, domain II 358 429 IPR029413 -
Pral3561g00049 644 SUPERFAMILY Starch-binding domain-like 335 420 IPR013784 GO:0030246
Pral3561g00049 644 FunFam Rhamnogalacturonate lyase B 332 431 - -
Pral3561g00049 644 CDD RGL4_N 11 301 - -
Pral3561g00049 644 CDD RGL4_M 335 434 IPR029413 -
Pral3561g00049 644 Gene3D - 442 633 - -
Pral3561g00049 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 636 - -
Pral3561g00049 644 SUPERFAMILY Galactose mutarotase-like 12 300 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00049 Pral-Chr3561 294419 299069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00049 1 635 Polysaccharide Lyase AT1G09890 71.855 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00049 K18195 - gmx:100793563 1156.35