Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00047 ATGGAGAAAGCCCGACCATGTTGTGGAAAGACGCGAAACAGCAGTTGTTTCTCTCTGTTCCTCGTAGTTCTTAGTATCGATGAATGCTTTTCAGCAACCAAAAGAAAAAAGTTTATCACGGATGGGTGCGTCCCAGCGAGTGGGGCTTATGTGGGATTGGCTGCCGTAGGAGATGCCGGATCTTGGCAGATAGAATGCAAGGGTTATCAGTTTTGGACCATCACTGATGATAAAGGCTACTTCACAATCACTGACATACGGCCCGGGCAATATAATCTTTACTCCTGGGTCACTGGGTTTATCGGCGATTATCGATATAACAATGTCATTAACATAACCTCAGGTTGTGAAGATGATGTGGGAGAACTTGTTTATGAGCCTCCAAGAGATGGCCCTACACTGTGGGAAATAGGAACCCCTGATCGCTCTGCAGCTGAATTCTATATCCCAGATCCAAATCCCAAGTACATTAACAGACTTTATGTCAATCATCCAGATAGGTTAAGGCAATATGGATTGTGGGAGAGGTATGCAGAATTGTATCCAAATGAAGACTTGGTCTACACCGTAGGAGTCAGTGACTACAAGAAAGATTGGTTCTTTGCTCAAGTTAATAGGAAGAAAGATAACAACACATGCCAAGAAACCACATGGCGAATTAATTTCAAACTCGATAATGTGAATACGAATGGGACCTACAAATTGCTGGCTCTGGCGTCTGTGCACTCTGCTGAGCTGCAAATTCGGGTAAATAACTCAGAAGCAAACCCACCTTTGTTCTGGAGTGGAGAGATTGGAAAGGAGAACACGATAGCTAGGCATGGAATTCACGGGCTGTACTGGCTGTTCAACGTTGATGTACAAGGCACTCTACTTGTGCAGGGGAACAATAGCTTTTTTCTAAAGCAAACAAGAAACACAAGTCCTTTTCAAGGGATTTTGTATGATTATGTTCGCTTAGAAGGGCCCTCTTCTATAACTAGTAATGATCGTAATATATGA 1002 0.4321 MEKARPCCGKTRNSSCFSLFLVVLSIDECFSATKRKKFITDGCVPASGAYVGLAAVGDAGSWQIECKGYQFWTITDDKGYFTITDIRPGQYNLYSWVTGFIGDYRYNNVINITSGCEDDVGELVYEPPRDGPTLWEIGTPDRSAAEFYIPDPNPKYINRLYVNHPDRLRQYGLWERYAELYPNEDLVYTVGVSDYKKDWFFAQVNRKKDNNTCQETTWRINFKLDNVNTNGTYKLLALASVHSAELQIRVNNSEANPPLFWSGEIGKENTIARHGIHGLYWLFNVDVQGTLLVQGNNSFFLKQTRNTSPFQGILYDYVRLEGPSSITSNDRNI 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00047 333 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 36 324 - -
Pral3561g00047 333 Pfam Polysaccharide lyase family 4, domain III 133 320 IPR029411 -
Pral3561g00047 333 CDD RGL4_M 44 123 IPR029413 -
Pral3561g00047 333 CDD RGL4_C 135 321 - -
Pral3561g00047 333 Gene3D - 131 321 - -
Pral3561g00047 333 SUPERFAMILY Galactose-binding domain-like 130 321 IPR008979 -
Pral3561g00047 333 Gene3D - 44 117 - -
Pral3561g00047 333 Pfam Polysaccharide lyase family 4, domain II 47 118 IPR029413 -
Pral3561g00047 333 FunFam Rhamnogalacturonate lyase B 29 120 - -
Pral3561g00047 333 SUPERFAMILY Starch-binding domain-like 62 114 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00047 Pral-Chr3561 274085 276331 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00047 35 324 Polysaccharide Lyase AT1G09890 65.979 4.19e-141 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00047 K18195 - gmx:100786488 499.204