LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3561g00033	ATGGCAGCCGTGAATCCGCAACCTTTGCAGGCGCGTCCATTCGAGAAACGCGTGCGGGACTCAGTACCAATGGAGGACGACGACGGTGACTATGAGGATGGGGGTGCTAGTGGTGATGCTATGGATGACTTGGAAGAGGGAAATATTAGTTCAGTGACTGTGCCAAACGACGGAGGAGTTGTTACGACTTCCCGAACTAGTGAGCTCACTCTCTCTTTCGAGGGTGAGGTTTATGTGTTTCCTGCTGTGACACCGGAAAAGGTGCAAGCTGTTTTGCTGCTTTTGGGAGGACGTGATGTGCCTGCATGTGCTCCTTCTATTGAAGTACCATTTGATGAAAGCAACAAGGGCATAGGTGATACTCCTAAGCAGTTGAACCTTTCAAGAAGAATAGCCTCCTTGGTTAGGTTCCGTGAAAAACGCAAGGAAAGATGTTTCGACAAGAAGATTAGGTACTCTGTGAGAAAAGAAGTGGCGCAAAGGATGCATCGCAAGAATGGGCAATTTGCATCCTCTAAAGAGAGTCCTGGTTCATCTAATTTGGATTCTGCGGAAAGCTTTCATCAGGATGGCACTCATTCCGGAACTTTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGTCGTGGTCCAGCTGGACCAAGGACTCTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAGTAAGGGAGGGAGAAATCTCTCTGTTGAGCAAAGTGAGCTGGAGACTCCTCTTGAAGTCAAACCTATTATCCTGGAAGGAGACTTGCTTGGCATCCATGACAAGCAGGGAATTTCTGAAGATCCTTCCAAGGCCGTTGCTGAAGGATCTAATAATCATGCTGTCAACCCAAGTGATGAGGAATTGCGGTCTGGTGAATGCTTACCAAACGCACTGTCATCAGGCTTTGTGCATTCTTCAGCAAATGATGAGGAGCAGGAACCTCTGGCTGAGCTTTCTAATCCTTCCGACACAGATATTGACATTCCTGGAAACTTCAACTAG	1044	0.4703	MAAVNPQPLQARPFEKRVRDSVPMEDDDGDYEDGGASGDAMDDLEEGNISSVTVPNDGGVVTTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPACAPSIEVPFDESNKGIGDTPKQLNLSRRIASLVRFREKRKERCFDKKIRYSVRKEVAQRMHRKNGQFASSKESPGSSNLDSAESFHQDGTHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSVEQSELETPLEVKPIILEGDLLGIHDKQGISEDPSKAVAEGSNNHAVNPSDEELRSGECLPNALSSGFVHSSANDEEQEPLAELSNPSDTDIDIPGNFN	347

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3561g00033	347	Gene3D	-	195	247	IPR013088	GO:0006355\|GO:0008270
	Pral3561g00033	347	MobiDBLite	consensus disorder prediction	165	198	-	-
	Pral3561g00033	347	MobiDBLite	consensus disorder prediction	280	347	-	-
	Pral3561g00033	347	ProSiteProfiles	CCT domain profile.	130	172	IPR010402	GO:0005515
	Pral3561g00033	347	ProSitePatterns	GATA-type zinc finger domain.	200	227	IPR000679	GO:0006355\|GO:0043565
	Pral3561g00033	347	ProSiteProfiles	GATA-type zinc finger domain profile.	194	253	IPR000679	GO:0006355\|GO:0043565
	Pral3561g00033	347	MobiDBLite	consensus disorder prediction	313	347	-	-
	Pral3561g00033	347	PANTHER	GATA TRANSCRIPTION FACTOR 28	3	340	IPR045280	GO:0006355
	Pral3561g00033	347	MobiDBLite	consensus disorder prediction	25	40	-	-
	Pral3561g00033	347	SMART	tify_2	62	97	IPR010399	-
	Pral3561g00033	347	CDD	ZnF_GATA	199	243	IPR000679	GO:0006355\|GO:0043565
	Pral3561g00033	347	SUPERFAMILY	Glucocorticoid receptor-like (DNA-binding domain)	195	244	-	-
	Pral3561g00033	347	Pfam	CCT motif	130	172	IPR010402	GO:0005515
	Pral3561g00033	347	Pfam	tify domain	65	96	IPR010399	-
	Pral3561g00033	347	ProSiteProfiles	Tify domain profile.	62	97	IPR010399	-
	Pral3561g00033	347	MobiDBLite	consensus disorder prediction	161	198	-	-
	Pral3561g00033	347	Pfam	GATA zinc finger	200	236	IPR000679	GO:0006355\|GO:0043565
	Pral3561g00033	347	SMART	GATA_3	194	247	IPR000679	GO:0006355\|GO:0043565
	Pral3561g00033	347	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3561g00033	Pral-Chr3561	185556	191994	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3561g00033	24	260	Tify Gene Family	AT1G51600	47.955	1.38e-66	210

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2C2-GATA	Pral3561g00033		CCT	8.4e-14	CL0281

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3561g00033	-		-	qsa:O6P43_019551	505.753