Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3561g00017 ATGGTGAGGAAGAAGATCAAGATTAGGAAAATCGACAACATAACGGCGAGGCAGGTGACATTCTCAAAGAGGAGGCGAGGGCTCATCAAGAAAGCTCAAGAGCTAGCTGTTCTCTGCGATGCTGAGGTTGGTCTCATTATTTTCTCTGCTACAGGAAAGCTCTATGATTATTCCAGCTCCAGCATAAAGGACATAGTTACAAGGTATAATCTGCACTCTCATGGCACTAATCCAGTGGACTGTCATTCCCTAGAGTTGCAGAACAGCAGTGACAGCAGATTGAGTAACGAGATAGCTCATAAAACCCACGAACTTCGGCAGCTGAAGGGTGAGGATCTTGAAGGACTTGACCTCGATGAATTGCAGAAGCTGGAGAAAAAGCTTGACGTAGGACTCACTCGCGTGAATCAGATTATGGATAAGCGGAATATGAGTGAAAGGGCTGAACTTCAGATGGAGGTAGACGAGTTGGCCAAAGTGAACAGGCAGATAAAGCAGAAGGTGGCTGTTATATGTAAAGGAAAAGACCCCATGATGATGAACTCAGATATGGGCACGCAGAAGGGTTTTTCGTCAAAAGCTGTGAATAATGGCTTACTTGTCGATGATGATTCCTCCAACATATCTCTGAGGTTAGGGCTCCCCTTCTCTTGTTGA 657 0.4536 MVRKKIKIRKIDNITARQVTFSKRRRGLIKKAQELAVLCDAEVGLIIFSATGKLYDYSSSSIKDIVTRYNLHSHGTNPVDCHSLELQNSSDSRLSNEIAHKTHELRQLKGEDLEGLDLDELQKLEKKLDVGLTRVNQIMDKRNMSERAELQMEVDELAKVNRQIKQKVAVICKGKDPMMMNSDMGTQKGFSSKAVNNGLLVDDDSSNISLRLGLPFSC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3561g00017 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3561g00017 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3561g00017 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3561g00017 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3561g00017 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3561g00017 218 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3561g00017 218 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Pral3561g00017 218 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Pral3561g00017 218 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 158 - -
Pral3561g00017 218 Coils Coil 147 167 - -
Pral3561g00017 218 Pfam K-box region 92 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3561g00017 218 FunFam Transcription factor, MADS-box 13 83 - -
Pral3561g00017 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3561g00017 218 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Pral3561g00017 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3561g00017 Pral-Chr3561 97021 100552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3561g00017 1 216 MADS-box Gene Family AT2G22540 48.319 2.05e-67 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3561g00017 K-box 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3561g00017 - - tcc:18591803 224.557