LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3543g00006	ATGCTTCGCCCTAATCTTCCTTTTCCTTTAATCATCACCTTCATCTTCTGCTCATGCTCGATTCTTGATGGCGTCGTTTCAGACCCACAGGCCAATCTTTTGACCAGAGGATGCAACCCGTACTACGAATTTCTGGTGCCCAACGTCACCATCTTCGGTGAAAATATAAACGCGACGTTGCGAGATATCAGAGAGCAGATCAGTGACCAAAACAAGCACTTCGTCACAGCACAGCAAGCTGCCAATGGTGGAAACACCGTCTCTACACTTTTTCAATGTAGAAGCTATCTCTCCACCGCCGACTGTGTCGCCTGCTTCGACATGGCAGCCACTGACATCCTCAGCTGTGCTGCCGGTGACCCTGGTGGCCGGGTTGTTTACGACGGCTGCTTCCTCAGGTACGACATTAGTAGCGCGTTCTTTGGTGATACAACACAGTCTATCAACAGTGCATCATGTGGGAATCAGACTACAACAGATGAACCTGCTTCTGCAGTTACCTCAGCTGTTCAACAAATTCTGATGAATCTCCAAACAGCAACCCCCACAATCACTGGCTTCTCTGCTGCCACAAGGACGCAACTTCCTAATAATGGTTCAATTATTTATGCATTTGCTCAGTGTATTGAGACTATCGCACAAAGTAAGTGCGAGGATTGCTTGGATGCTCAGTACAATAATATGCAGACTTGTCTTCCCAGTTCAGATGGTAGGGCTTATGCCAATGGCTGCTTCTTGAGATATTCCATCACTTCCTTCTTTCCTGATAATCAGACCATTGATATTGCACCCTCCTCCAAGCAGCAAGGTTCAAGAAATAATAAGGGAGCCATTATAGGTGGTGTTGTTGGAAGCGTAGTAGCTCTTGCTTTGATCTTTCTTGCATTATATGTTTGGATTAGACGAATAAACGAACCTAAGAGGGTTCCTAGAGGTGAGATAATTGGAGGAAGCAAGTTGAAAGGCCCAACTATTTATAATTATACGGTCTTGAAGACTGCAACCAAGAATTTCAGTGAAGAAAATAAGCTGGGAGAAGGAGGGTTTGGTGTTGTATATAAGGGCACTTTGAAGAATGGCAAAGGAATTGCAGTGAAGAAATTAACATTTCGCCAGTTCAACAAGATGGAGGAGGACTTTGAAAATGAAGTGAAGCTTATAAGTAAAATGAAAGGCCGCCTCAACTGGAAGCAACGATATGATATAATTTTAGGCATCGCAAGGGGTCTAGTCTACCTACATGAGGAATTCCACATTTGTATCATACATAGAGATATAAAACCTAACAATGTTCTCTTGGATGATGATCTTCAGCCAAAAATTGCTGATTTTGGATTGGCAAGACTTCTACCAGAAGACAAGTCTCATCTTAGCACCAAATTTGCAGGAACATTAGGATACACAGCACCAGAGTATATAATCCATGGCCAATTATCCGAGAAGGCTGATGTCTATAGTTATGGTGTTGTAATCTTGGAGATTATTAGTGGCCAAGAAAGCAAGGCACTGGGAGTATATGGTGATATTGAAGGCGAATTCCTCCTCCAAAAAGCTTGGAAGCTATATGGAAAAGGCATGCATGGGGAGCTAATAGACAAGACCCTAGACCCTATTGATTATGATGTAGAAGAAGTAAAGAAAGTCATTGAGGTTAGTTTGCTTTGCACCCAAGCATCTGCTGAAATAAGGCCAACAATGTCCGAAGTTGTTGTCTTACTCCAAAACAAGGACTTGTTAGAGAATATGAAACCCACTATGCCTGTCTTGATTGAAACAAATTAG	1782	0.4287	MLRPNLPFPLIITFIFCSCSILDGVVSDPQANLLTRGCNPYYEFLVPNVTIFGENINATLRDIREQISDQNKHFVTAQQAANGGNTVSTLFQCRSYLSTADCVACFDMAATDILSCAAGDPGGRVVYDGCFLRYDISSAFFGDTTQSINSASCGNQTTTDEPASAVTSAVQQILMNLQTATPTITGFSAATRTQLPNNGSIIYAFAQCIETIAQSKCEDCLDAQYNNMQTCLPSSDGRAYANGCFLRYSITSFFPDNQTIDIAPSSKQQGSRNNKGAIIGGVVGSVVALALIFLALYVWIRRINEPKRVPRGEIIGGSKLKGPTIYNYTVLKTATKNFSEENKLGEGGFGVVYKGTLKNGKGIAVKKLTFRQFNKMEEDFENEVKLISKMKGRLNWKQRYDIILGIARGLVYLHEEFHICIIHRDIKPNNVLLDDDLQPKIADFGLARLLPEDKSHLSTKFAGTLGYTAPEYIIHGQLSEKADVYSYGVVILEIISGQESKALGVYGDIEGEFLLQKAWKLYGKGMHGELIDKTLDPIDYDVEEVKKVIEVSLLCTQASAEIRPTMSEVVVLLQNKDLLENMKPTMPVLIETN	593

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3543g00006	593	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	393	591	-	-
	Pral3543g00006	593	FunFam	Cysteine-rich receptor-like protein kinase 2	148	253	-	-
	Pral3543g00006	593	Gene3D	Phosphorylase Kinase; domain 1	320	388	-	-
	Pral3543g00006	593	Gene3D	-	145	253	IPR038408	-
	Pral3543g00006	593	Gene3D	-	31	138	IPR038408	-
	Pral3543g00006	593	Pfam	Protein kinase domain	397	499	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3543g00006	593	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Pral3543g00006	593	SMART	serkin_6	338	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3543g00006	593	ProSitePatterns	Protein kinases ATP-binding region signature.	344	367	IPR017441	GO:0005524
	Pral3543g00006	593	ProSiteProfiles	Protein kinase domain profile.	338	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3543g00006	593	ProSiteProfiles	Gnk2-homologous domain profile.	147	253	IPR002902	-
	Pral3543g00006	593	ProSiteProfiles	Gnk2-homologous domain profile.	31	139	IPR002902	-
	Pral3543g00006	593	SUPERFAMILY	Protein kinase-like (PK-like)	324	582	IPR011009	-
	Pral3543g00006	593	FunFam	Cysteine-rich receptor-like protein kinase 2	380	581	-	-
	Pral3543g00006	593	Pfam	Salt stress response/antifungal	153	249	IPR002902	-
	Pral3543g00006	593	Pfam	Salt stress response/antifungal	50	135	IPR002902	-
	Pral3543g00006	593	ProSiteProfiles	Prokaryotic membrane lipoprotein lipid attachment site profile.	1	19	-	-
	Pral3543g00006	593	Gene3D	Transferase(Phosphotransferase) domain 1	389	585	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3543g00006	Pral-Chr3543	27981	32758	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3543g00006	6	591	Receptor kinase-like Gene Family	AT1G70520	34.380	1.69e-97	309

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral3543g00006		Pkinase	6.9e-28	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3543g00006	-		-	pcin:129300003	735.717