LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3543g00002	ATGAAACTCTCATTCCTCCTTCTTCGTCGTTTCCAAACACCAATCAATACCTTGATATCATTTGCTCTATTAACCTCTTTTTCCTCCTCCTCCTACTCCTCCTTCTTCTTCCAAAACATGTTTCAACCTCATGTCCTTCCTTTAATCGCCTTCGTCTTCTGGTCATGGCGGATTCTTGACGGCGTCGTTTCGGATCCCCAGATCAATTTTTTGACCAGAGGGTGCAACCCATACAACGAATACCTAGTGGCTAACGTCTCCCTCTTTGAAGCAAACATAAACGCAACACTGCGAGACATCAGAGAGCAGATCAGTGGCCAAAACAAGCACTTCGCCACCGCACAGCAAGCTGCCAGTGGTGGAAACACCGTCTCTAGTCTTTTTCAATGCAGAAGCTATCTCTCCATGCCCGACTGCATCGCCTGCTTCGACGTCGCCGCCCCTCAAATCCTCAGCTGTGCTGCCGGCGAACCGGGTGGCCGTGTTGTCTACGACGGGTGCTACCTCAGGTACGACATTAGTGTCGCTTTCTTTGGAGCTACAACACAGTCTATCAATAGTGCATCGTGTGGGAATCAGACTATAACAGAAGAACCTGCTATTTCATTTACCTCAGCTGTTCAACAAATTCTAATGAATCTCCAAACAGCAACTCCCAGAATCACTGGCTTCTCTGTAGCTACCAAGGCACAAGTTCCTACTAATGGTCCAACTATTTATGCATTTGCTCAGTGCACAGAAACTATCACTCAGAGTGAGTGCCAGAACTGCTTGAATGTTCTGTACAACAATATGCAGAGTTGTCTTCCCAATTCAGAAGGTAGGGCTTTTGCTGATGGCTGTTTCTTGAGATATTCCACAACCTCCTTCTTTGCCGATAATCAGACTATTGATATCGCACCCTCCTTCAAGCAAGGTTCAAGCAATAATAAGGGAGCCATTATAGGAGGTGTTGTTGGAAGCGTAGTAGTTCTTGCTTTGATCTTTGTTGCATTGTATGTCTGGGTGGGACGACTAAAAAGGCCAACTAGGAGGGTTCCTGGAGGAGACGTTATTGGAGCAACCAAGTTGAAAGGCCCGGCTATTTATAATTATAACGACCTGAAGACTGCAACCAAGAACTTCAGCGAAGAGAATAAGCTAGGACAAGGAGGATTTGGTGTTGTGTATAAGGGCACTTTGAAGAATGGAAAAGAAATTGCAATCAAGAAATTAACATTTCGCCATTTCACGAGGATGGAGGAGGAATTTGAAAATGAAGTGAAGCTCATAAGCAACGTTCATCATCGGAATCTTGTTCGACTCCTGGGATATTGTATTTATGGCAAAACTAGAATTCTTGTTTATGAATACATGAAAAATAGCAGTCTTGACATATTCTTATTCGGTAACCTTCTCTCAATTAACCGATCTTATGTACTGTTTTTCGTAAAATTAGTGGCATTATCAACGTATCATCATCTCCTCCAGCTAACGAACTTATTCACATGGCATAATTTTATTCGACTGAGTAAAATGCAAGGCTCACTCAATTGGAAGCAACGACATGATATAATTTTAGGCACTGCAAGGGGTCTCGCTTATTTGCATGAGGAATTCTATGTTTGTATCATACATAGAGATGTAAAGCCTAATAACATTCTCTTGGATGAGGATCTTCAACCTAAAATTGCTGATTTTGGGTTGGCAAGGCTTCTTCCTGAGGACAAAACTCATCTTAGCACCAACTTCGCTGGAACATTAGGATATTCAGCACCGGAGTATGTAATTCATGGCCAATTATCTGAGAAGGTTGATGTTTATAGTTACGGTGTTGCAATCTTGGAGATTATAAGTGGCCAAAAAAATAAGAAACTAGGAGTTGATGGTGATATTGAAGGCGAATTCCTCCTCCGAAAAGCTTGGAAGTTATATGAAGAAGGTACACATGCGGAGCTAGTGGACGATACCTTAGACCCTAATGATTATGATGTAGAAGAAGTGAAGAAAGTCATAGAGGTTGGTTTGCTTTGCATCCAAGCATCTGCTGAGATGAGACCAACAATGTCTGAGATTGTTGCTTTGCTCCAAACTAAGGACTTGTTAGAGAATATGAAACCCACTATGCCTATCTTGATTGAAACAAATTAG	2130	0.4235	MKLSFLLLRRFQTPINTLISFALLTSFSSSSYSSFFFQNMFQPHVLPLIAFVFWSWRILDGVVSDPQINFLTRGCNPYNEYLVANVSLFEANINATLRDIREQISGQNKHFATAQQAASGGNTVSSLFQCRSYLSMPDCIACFDVAAPQILSCAAGEPGGRVVYDGCYLRYDISVAFFGATTQSINSASCGNQTITEEPAISFTSAVQQILMNLQTATPRITGFSVATKAQVPTNGPTIYAFAQCTETITQSECQNCLNVLYNNMQSCLPNSEGRAFADGCFLRYSTTSFFADNQTIDIAPSFKQGSSNNKGAIIGGVVGSVVVLALIFVALYVWVGRLKRPTRRVPGGDVIGATKLKGPAIYNYNDLKTATKNFSEENKLGQGGFGVVYKGTLKNGKEIAIKKLTFRHFTRMEEEFENEVKLISNVHHRNLVRLLGYCIYGKTRILVYEYMKNSSLDIFLFGNLLSINRSYVLFFVKLVALSTYHHLLQLTNLFTWHNFIRLSKMQGSLNWKQRHDIILGTARGLAYLHEEFYVCIIHRDVKPNNILLDEDLQPKIADFGLARLLPEDKTHLSTNFAGTLGYSAPEYVIHGQLSEKVDVYSYGVAILEIISGQKNKKLGVDGDIEGEFLLRKAWKLYEEGTHAELVDDTLDPNDYDVEEVKKVIEVGLLCIQASAEMRPTMSEIVALLQTKDLLENMKPTMPILIETN	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3543g00002	709	SUPERFAMILY	Protein kinase-like (PK-like)	360	694	IPR011009	-
	Pral3543g00002	709	FunFam	Cysteine-rich receptor-like protein kinase 2	341	451	-	-
	Pral3543g00002	709	FunFam	Cysteine-rich receptor-like protein kinase 2	185	290	-	-
	Pral3543g00002	709	ProSiteProfiles	Gnk2-homologous domain profile.	68	176	IPR002902	-
	Pral3543g00002	709	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	537	549	IPR008271	GO:0004672\|GO:0006468
	Pral3543g00002	709	ProSiteProfiles	Gnk2-homologous domain profile.	183	290	IPR002902	-
	Pral3543g00002	709	SMART	serkin_6	375	695	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3543g00002	709	Gene3D	Phosphorylase Kinase; domain 1	352	451	-	-
	Pral3543g00002	709	CDD	STKc_IRAK	381	690	-	-
	Pral3543g00002	709	FunFam	Cysteine-rich receptor-like protein kinase 2	494	697	-	-
	Pral3543g00002	709	ProSiteProfiles	Protein kinase domain profile.	375	695	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3543g00002	709	Gene3D	-	182	290	IPR038408	-
	Pral3543g00002	709	Gene3D	-	68	174	IPR038408	-
	Pral3543g00002	709	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	128	707	-	-
	Pral3543g00002	709	Gene3D	Transferase(Phosphotransferase) domain 1	495	701	-	-
	Pral3543g00002	709	Pfam	Protein tyrosine and serine/threonine kinase	378	688	IPR001245	GO:0004672\|GO:0006468
	Pral3543g00002	709	ProSitePatterns	Protein kinases ATP-binding region signature.	381	404	IPR017441	GO:0005524
	Pral3543g00002	709	Pfam	Salt stress response/antifungal	80	172	IPR002902	-
	Pral3543g00002	709	Pfam	Salt stress response/antifungal	190	287	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3543g00002	Pral-Chr3543	12969	16906	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3543g00002	44	707	Receptor kinase-like Gene Family	AT1G70520	35.841	3.02e-117	364

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral3543g00002		PK_Tyr_Ser-Thr	9.8e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3543g00002	-		-	gmx:100813585	738.028