Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3542g00005 ATGCCGAGAAGGATCTCGTATTTTGAAATTTTGGACGCAACCAACAGATTTGATGAGAGTAACTTACTAGGAAGTGGAAGTTTTGGTTCTGTATTCCAAGGAAGGCTTTCAGGTGGAATAATGGTTGCTGTTAAAATATTCAATTTTTATTCAGAAGCATTGTCTAAGAGCTTTGAAGTGGAATGTGACACAATGCGTAATGTGCGTCATCGTAATTTGGTGAAGATTATTAGTAGTTGTTCCAGTGATGACTTCAAGTGTTTGATAATGGAGTTCATTCCCAATGGGAGCCTTGAAAAATGGTTATATTCTCATAACTATTGTTTGGATTTTCTGCAAAGGTTAAATATAATAATAAACATCGCATCTGCTTTGGAATATCTCCATCATGGCTTGTCAACACCGATAGTCCACTGTAATTTGAAGCCAAGCAATATTTTGTTGGATGATGACATGGTTGCTCATGTCACTGACTTTGGAATTGCAAAATTTTTAGATGAAGGGAAATCTAGGACACTCACGGAGACAATACCTACAATTGGTTATGTTGCACCAGAATATGGATCTCTTGGAATTGTTTCAACAAAAGTAGATGTGTACAGCTTCGGAATAATACTAATGGAAGTATTCACAAGAAAAAGGCCATCAGAAGACATATTTGTGGATGGGTTGAACTTAAAGAGTTGGCTTCCATTGAAGAACAACAGCGTGAAGAATTCGGCGCGTCTCCTCTGCTCTCAGCCGCCGTCCAGCGTCTCCTCTGCTTCGCAGGTTGCGTCTCCTCCCTCTGTGCTTCGGTTTACTCTGTTTCGTTTTCGCCGTTCCCTCCAGCCGCCTCGCGTGTGTGTGTGTTTGTTTGTGCGCTCCAGCCCTTGTGCGCCGCTTGCGTCCTCTCCGTCTCGTGCCTCCTGTTCGTGCCTCCTCCTCAGCTCTTCCTCTGTTTCGCTCCCCGCTACAATGTCCTTGTCTGATAGGTACTCAAATTCGAATTTAGATTCATTTCTACCTGTGAAACTACCTGAGTTAGTTCCCGGAGGGAAGATCACTCTATTGCTGATTCTTGGAGCTAGCTGGTCTGCCCGCTCCAAGTGGAAAGCTGAGCCACGGATCCTAAGCGAAGGCTCTGAGCCACCGCGTGAGGCTGGTTTCACAGAGCAGCGACGACCTCTTAATCTTCACAGTGGAAGGATCACAAGCCGCTGCTTCTCCAGCCCGCTATGCCTGAATCTAGACAACAAGAACTGA 1245 0.4466 MPRRISYFEILDATNRFDESNLLGSGSFGSVFQGRLSGGIMVAVKIFNFYSEALSKSFEVECDTMRNVRHRNLVKIISSCSSDDFKCLIMEFIPNGSLEKWLYSHNYCLDFLQRLNIIINIASALEYLHHGLSTPIVHCNLKPSNILLDDDMVAHVTDFGIAKFLDEGKSRTLTETIPTIGYVAPEYGSLGIVSTKVDVYSFGIILMEVFTRKRPSEDIFVDGLNLKSWLPLKNNSVKNSARLLCSQPPSSVSSASQVASPPSVLRFTLFRFRRSLQPPRVCVCLFVRSSPCAPLASSPSRASCSCLLLSSSSVSLPATMSLSDRYSNSNLDSFLPVKLPELVPGGKITLLLILGASWSARSKWKAEPRILSEGSEPPREAGFTEQRRPLNLHSGRITSRCFSSPLCLNLDNKN 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3542g00005 414 FunFam Serine-threonine protein kinase plant-type 1 92 - -
Pral3542g00005 414 ProSitePatterns Protein kinases ATP-binding region signature. 23 45 IPR017441 GO:0005524
Pral3542g00005 414 Gene3D Transferase(Phosphotransferase) domain 1 93 264 - -
Pral3542g00005 414 FunFam Os07g0541700 protein 93 180 - -
Pral3542g00005 414 Gene3D Phosphorylase Kinase; domain 1 1 92 - -
Pral3542g00005 414 ProSiteProfiles Protein kinase domain profile. 17 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3542g00005 414 Pfam Protein kinase domain 18 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3542g00005 414 SUPERFAMILY Protein kinase-like (PK-like) 3 221 IPR011009 -
Pral3542g00005 414 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 229 - -
Pral3542g00005 414 AntiFam Overlaps SRP RNA, same strand 378 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3542g00005 Pral-Chr3542 55582 63760 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3542g00005 3 229 Receptor kinase-like Gene Family AT5G20480 45.749 1.42e-64 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral3542g00005 Pkinase 3.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3542g00005 - K13420 qsa:O6P43_031977 362.459