Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3542g00002 ATGAAACTTCCCAACTCCATTGGAAACTTATCTGATTCTTTACAGATGCTGATGATCGACTTATGCGGGATTAATGGTAACATACCATCAGAAATTGGGTATCTGTCCAACTTGTTTAAGATATCTTTTGCTGGAAATGTTTTAAATGGATCAATTCCAACAACAATTAGCAACTTACAGGCTCTTCAGCATTTGAATCTTGCGGGTAATGAGTTAGATGGTTTCATTGTAGATGAGCTTTGTGATATTAGAAGGCTTGCATATTTATATCTATCTCGAAACAAGCTTTCTGGAGCAATGCCCCCTTGCTTAGGAAACCTTATATCCCTACAAGGACTTTACTTGGGCGGCAATAAGTTGAGTTCCGAGATACCTTCTTCCTTTTGGAACTTGACGGGTGTATTGGAAGTAAACCTATCTTCCAACATGTTAGTTGGAAATCTTTCATTCAAGATTAGGAACATGAAAGCTCTCATTCGATTAGACTTGTCAAGAAATAACATTTCAGGCACCATTCCATCAACCATAGGCAGCTTGCAGAATTTGCAAAATGTCTCCTTAGCAAATAACATATTGCAAGGGACGATTCCAGAATCACTTGGGAATTTGCTGAGCTTAGTAAAGCTAGACCTTTCCCAAAATAATTTGTCTGGTGAGATTCCTAAATCACTAGAGCCACTTACATCCCTTAAGTATGTTAATCTCTCTTATAACAGACTACAAGGTGAGATTCCTAGTGGTGGGGTCTTCAACGATTTGACGGCTGAATCTTTCATGATGAATAAAGCACTTTGTGGTGAGCCAAAAATGCAAGTTCCTCCATGCAGAAAAGAACAAAGAAAGAGGTCAAAGGCAAAATGGATTTTGTTGAAATACATACTACCCCTGGTTTTGTCAGCAATTTTAGTCCTTTCAGGCATTGTCCTCTTTCAGCGTAAACGAATGAATTCTAGGCATACCATAATGAAACAAGATTTATCAACTTTAGGAATGCCAAGAAGGATTTCGTATTTTGAAATTTTGGATGCAACCAACAGATTTGATGAGAGTAACTTATTAGGAAGTGGAAGTTTTGGTTCTGTATTCAAAGGAAGGCTTTCAAATGGAATAATAGTTGCTTTTAAAATATTCAATTTTGATTCAGAAGCTATGTCAAAGAGCTTTGAAGTGGAATGTGACACACTGCGTAATGTGCGTCACCGCAATTTGGTGAAGATCATTAGTAGTTGTTCCAGTGATGACTTCAAGTGTTTGATAATGGAGTTCATTCCCAATGGGAGCCTTGAAAAATGGTTATATTCTCATAACTATTGTTTGGATTTTCTGCAACGGTTAAATATAATGATAAACATCGCATCTGCTTTGGAATATATCCATCACGGCTTGTCAACACCGATAGTCCACTGTGATTTGAAACCAAGCAATATTTTGTTGGATGATGACATGGTTGCTCATGTTAGTGACTTTGGAATTGCAAAATTTTTAGATGAAGGGAAATCTAAGACACTCACAGAGACAATACCTACAATTGGTTATGTTGCCCCCGAATATGGGTCTCTTGGAATTGTTTCAACAAAAGTTGATGTGTACAGCTTCGGAATAATATTAATAGAAGTATTCACAAGAAAGAGGCCAACAGAAGATATGTTTGTGGGTGGATTGGACTTGAAGAGCTGGGTAAGTGAATCAATGTCTCATTCACTAACTCAAGTCATAGATTCCAATTTATTACAAGACGATGATGAACAATATATTGCTAATATTTTGACAACTGCATCCACTATTCTTGAGTTGGCCCTGAACTGTTGTGCCAATTTTTCACAAAGGCGTTGCAATATGTCAGAGGTTGTGGTATCATTAAACAAGATCAAGGACATGTTTATTCAAACATGTTATTTAAAGAAATATTGA 1911 0.3689 MKLPNSIGNLSDSLQMLMIDLCGINGNIPSEIGYLSNLFKISFAGNVLNGSIPTTISNLQALQHLNLAGNELDGFIVDELCDIRRLAYLYLSRNKLSGAMPPCLGNLISLQGLYLGGNKLSSEIPSSFWNLTGVLEVNLSSNMLVGNLSFKIRNMKALIRLDLSRNNISGTIPSTIGSLQNLQNVSLANNILQGTIPESLGNLLSLVKLDLSQNNLSGEIPKSLEPLTSLKYVNLSYNRLQGEIPSGGVFNDLTAESFMMNKALCGEPKMQVPPCRKEQRKRSKAKWILLKYILPLVLSAILVLSGIVLFQRKRMNSRHTIMKQDLSTLGMPRRISYFEILDATNRFDESNLLGSGSFGSVFKGRLSNGIIVAFKIFNFDSEAMSKSFEVECDTLRNVRHRNLVKIISSCSSDDFKCLIMEFIPNGSLEKWLYSHNYCLDFLQRLNIMINIASALEYIHHGLSTPIVHCDLKPSNILLDDDMVAHVSDFGIAKFLDEGKSKTLTETIPTIGYVAPEYGSLGIVSTKVDVYSFGIILIEVFTRKRPTEDMFVGGLDLKSWVSESMSHSLTQVIDSNLLQDDDEQYIANILTTASTILELALNCCANFSQRRCNMSEVVVSLNKIKDMFIQTCYLKKY 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3542g00002 636 SUPERFAMILY L domain-like 12 268 - -
Pral3542g00002 636 Pfam Protein kinase domain 348 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3542g00002 636 PANTHER OS04G0122200 PROTEIN 3 624 - -
Pral3542g00002 636 Pfam Leucine rich repeat 181 240 IPR001611 GO:0005515
Pral3542g00002 636 Pfam Leucine rich repeat 84 144 IPR001611 GO:0005515
Pral3542g00002 636 SMART LRR_typ_2 59 83 IPR003591 -
Pral3542g00002 636 SMART LRR_typ_2 227 252 IPR003591 -
Pral3542g00002 636 SMART LRR_typ_2 203 226 IPR003591 -
Pral3542g00002 636 SMART LRR_typ_2 107 130 IPR003591 -
Pral3542g00002 636 SMART LRR_typ_2 155 179 IPR003591 -
Pral3542g00002 636 Gene3D Transferase(Phosphotransferase) domain 1 423 632 - -
Pral3542g00002 636 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 423 632 - -
Pral3542g00002 636 ProSitePatterns Protein kinases ATP-binding region signature. 353 375 IPR017441 GO:0005524
Pral3542g00002 636 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 279 - -
Pral3542g00002 636 FunFam Serine-threonine protein kinase plant-type 327 422 - -
Pral3542g00002 636 Gene3D Phosphorylase Kinase; domain 1 330 422 - -
Pral3542g00002 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Pral3542g00002 636 PRINTS Leucine-rich repeat signature 206 219 - -
Pral3542g00002 636 PRINTS Leucine-rich repeat signature 227 240 - -
Pral3542g00002 636 SMART serkin_6 347 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3542g00002 636 ProSiteProfiles Protein kinase domain profile. 347 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3542g00002 636 Gene3D Ribonuclease Inhibitor 1 284 IPR032675 -
Pral3542g00002 636 SUPERFAMILY Protein kinase-like (PK-like) 328 620 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3542g00002 Pral-Chr3542 13653 16224 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3542g00002 3 630 Receptor kinase-like Gene Family AT3G47570 36.682 4.62e-128 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral3542g00002 Pkinase 5.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3542g00002 - K13420 qsa:O6P43_031966 752.281