Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3541g00002 ATGTCTTCCAGAAGATCTTCCTCCTCCCGTTCCAGACCATCCGGTGCTTCCTCTGATATCACTGAAGCTCAGATCAACGATCTTGTCTCCAAGTTACAACAACTCATCCCTGAGCTTCGCTCTCCACGTCGTTCCGACAAGGTTTCTGCTTCAAAGGTGTTACAGGAGACTTGTAACTACATAAAGAGCTTGCACAGAGAAGTTGATGATCTAAGTGAGAGATTGTCTGAGCTCTTGGCCAACACCGACTTCAACAGTGCTCAAGCCGCCATTATTAGAAGCCTTCTTATGTAA 294 0.4626 MSSRRSSSSRSRPSGASSDITEAQINDLVSKLQQLIPELRSPRRSDKVSASKVLQETCNYIKSLHREVDDLSERLSELLANTDFNSAQAAIIRSLLM 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3541g00002 97 PANTHER TRANSCRIPTION FACTOR PRE 1 97 IPR044293 GO:0006355|GO:0040008|GO:0046983
Pral3541g00002 97 Pfam Helix-loop-helix DNA-binding domain 24 65 IPR011598 GO:0046983
Pral3541g00002 97 MobiDBLite consensus disorder prediction 1 20 - -
Pral3541g00002 97 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 24 87 IPR036638 GO:0046983
Pral3541g00002 97 Coils Coil 61 81 - -
Pral3541g00002 97 CDD bHLH_AtPRE_like 20 81 - -
Pral3541g00002 97 Gene3D - 22 92 IPR036638 GO:0046983
Pral3541g00002 97 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Pral3541g00002 97 FunFam Transcription factor ILI6 10 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3541g00002 Pral-Chr3541 116323 117562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3541g00002 20 96 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G74500 77.922 1.73e-37 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3541g00002 HLH 2.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3541g00002 - - gmx:100804830 143.665