Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3533g00070 ATGGATCCAGGAGCTATGATGAACGAAGGTTCATTTGTGAACGGGGCGCCTAATACGACGCCGTATAATCTGGCGGATATCTGGCAATCACCGATGAACATTGGTGCGGGTCTCGGAGATTCCGGGGTCGGGTTGGGGTTGAGGAGGCCACAGTTTGGGCACAATTTGGGGCTGCCACCGTTTAGTGATTTTTCGGGTCATACGAATCGAGATGTGCCCCGTAATGATCAAACCAGCTCGGAGCAGAGAGGTAATAATAATGATGATCATGGAGTCAATAACAATAAGAAGCGTCGTGATTTCGAGGATGAGTCCACCAAGGCCGTCTCCACCAGTACTGACAGTGATGGCATGGATGATGGTGGTGAAGGAAAACGGCTTAAAGCTTCAGGGAATAAGAATGAGAGTCGAGACACCAAAGCTGAAGCACAACCCAGTTCAGGAAAGCCTGCGGAGCAAAATAATCAGCCACCTCCTTTTGAGCCTCCTAAGCAAGATTACATTCATGTTCGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCTAGAAGGGAGAAGATAAGCGAGCGGATGAAAATTCTTCAGGATTTGGTCCCTGGCTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATTATAAATTATATCCAATCATTACAACGCCAAGTTGAGTTCCTATCTATGAAACTTGAAGCTGTAAATTCAAGACTGAACTCTGGCATCGATGTCTTTCCTCCTAAAGATTTTGGTCAACAATCATTTGAAGCGGCTGGCATGGCATTTGGCTCACAAGCTACAAGAGAGTATAGCCGGGGCTTATCACCGGAGTGGTTACATATGCAGGTAGGTGGTGGTTTTGAAAGAACGTCTTAG 894 0.4664 MDPGAMMNEGSFVNGAPNTTPYNLADIWQSPMNIGAGLGDSGVGLGLRRPQFGHNLGLPPFSDFSGHTNRDVPRNDQTSSEQRGNNNDDHGVNNNKKRRDFEDESTKAVSTSTDSDGMDDGGEGKRLKASGNKNESRDTKAEAQPSSGKPAEQNNQPPPFEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIDVFPPKDFGQQSFEAAGMAFGSQATREYSRGLSPEWLHMQVGGGFERTS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3533g00070 297 CDD bHLH_AtBPE_like 166 251 - -
Pral3533g00070 297 SMART finulus 182 232 IPR011598 GO:0046983
Pral3533g00070 297 Coils Coil 223 243 - -
Pral3533g00070 297 MobiDBLite consensus disorder prediction 118 142 - -
Pral3533g00070 297 MobiDBLite consensus disorder prediction 90 109 - -
Pral3533g00070 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 174 243 IPR036638 GO:0046983
Pral3533g00070 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 176 226 IPR011598 GO:0046983
Pral3533g00070 297 MobiDBLite consensus disorder prediction 71 89 - -
Pral3533g00070 297 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 76 265 IPR024097 GO:0006355
Pral3533g00070 297 Gene3D - 173 249 IPR036638 GO:0046983
Pral3533g00070 297 MobiDBLite consensus disorder prediction 57 165 - -
Pral3533g00070 297 FunFam Basic helix-loop-helix transcription factor 173 245 - -
Pral3533g00070 297 Pfam Helix-loop-helix DNA-binding domain 180 227 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3533g00070 Pral-Chr3533 1074228 1078120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3533g00070 1 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.471 1.98e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3533g00070 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3533g00070 - - qsa:O6P43_033086 388.267