Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3533g00067 ATGATGAACGAAGGTTCATTTGTGAACGGGGCGCCTAATACGACGCCGTATAATCTGGCGGATATCTGGCAATCACCGATGAACATTGGTGCGGGTCTCGGAGATTCCGGGGTCGGGTTGGGGTTGAGGAGGCCACAGTTTGGGCACAATTTGGGGCTGCCACCGTTTAGTGATTTTTCGGGTCATACGAATCGAGATGTGCCCCGTAATGATCAAACCAGCTCGGAGCAGAGAGGTAATAATAATGATGATCATGGAGTCAATAACAATAAGAAGCGTCGTGATTTCGAGGATGAGTCCACCAAGGCCGTCTCCACCAGTACTGACAGTGATGGCATGGATGATGGTGGTGAAGGAAAACGGCTTAAAGCTTCAGGGAATAAGAATGAGAGTCGAGACACCAAAGCTGAAGCACAACCCAGTTCAGGAAAGCCTGCGGAGCAAAATAATCAGCCACCTCCTTTTGAGCCTCCTAAGCAAGATTACATTCATGTTCGAGCAAGAAGAGGCCAAGCTACTGATAGCCACAGTCTAGCAGAAAGAGCTAGAAGGGAGAAGATAAGCGAGCGGATGAAAATTCTTCAGGATTTGGTCCCTGGCTGTAATAAGGTTATTGGGAAAGCACTGGTCCTTGATGAGATTATAAATTATATCCAATCATTACAACGCCAAGTTGAGTTCCTATCTATGAAACTTGAAGCTGTAAATTCAAGACTGAACTCTGGCATCGATGTCTTTCCTCCTAAAGATTTTGGTCAACAATCATTTGAAGCGGCTGGCATGGCATTTGGCTCACAAGCTACAAGAGAGTATAGCCGGGGCTTATCACCGGAGTGGTTACATATGCAGGTAGGTGGTGGTTTTGAAAGAACGTCTTAG 879 0.4653 MMNEGSFVNGAPNTTPYNLADIWQSPMNIGAGLGDSGVGLGLRRPQFGHNLGLPPFSDFSGHTNRDVPRNDQTSSEQRGNNNDDHGVNNNKKRRDFEDESTKAVSTSTDSDGMDDGGEGKRLKASGNKNESRDTKAEAQPSSGKPAEQNNQPPPFEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIDVFPPKDFGQQSFEAAGMAFGSQATREYSRGLSPEWLHMQVGGGFERTS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3533g00067 292 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 171 221 IPR011598 GO:0046983
Pral3533g00067 292 SMART finulus 177 227 IPR011598 GO:0046983
Pral3533g00067 292 Coils Coil 218 238 - -
Pral3533g00067 292 MobiDBLite consensus disorder prediction 85 104 - -
Pral3533g00067 292 FunFam Basic helix-loop-helix transcription factor 168 240 - -
Pral3533g00067 292 Gene3D - 168 244 IPR036638 GO:0046983
Pral3533g00067 292 CDD bHLH_AtBPE_like 161 246 - -
Pral3533g00067 292 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983
Pral3533g00067 292 MobiDBLite consensus disorder prediction 66 84 - -
Pral3533g00067 292 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 260 IPR024097 GO:0006355
Pral3533g00067 292 MobiDBLite consensus disorder prediction 52 160 - -
Pral3533g00067 292 MobiDBLite consensus disorder prediction 113 137 - -
Pral3533g00067 292 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 238 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3533g00067 Pral-Chr3533 1074228 1078120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3533g00067 1 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 56.400 1.07e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3533g00067 HLH 2.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3533g00067 - - qsa:O6P43_033086 379.793