Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3533g00065 ATGGACCAACAAGTTCTCGTGGATGAAAACTTTCCACTCTTCTCCAAGTCTCATAAATCCTCAAAAGACCACGTGCCAGCTGCCTCATCTGCTACAGCCTCCACCGCTGTTGCCACCAAAGACATTAACTTTGATAGCCAACACCTTGGAAAGTCAGATGACACAGATCTTGATTTCAATCCTACAACTTTTGGGGAGCTTGGACTTGCAGAATGGGCTGTGAAGACTTGCAAAGAGCTTGCAATGTGCAAGCCTCGACAGGTCCAGTTACATTGCATCCCAAAGGTTCTAGATGGCTGCCATGTGCTTGGCATGATGAGACAGAAGTGGGAAGACTGCAGCATTTGCTAACCAATTCTTCACCGATTGGGTGAGCATCTTGGGGTTTTTGCTTTGGTTTTGACGCCAACTAGGGAGTTGGCATATCAACTAGCAGAGCAATTTAGGGTGGGTTCATGCTTGCACGTGCGGATAGCTGTGGTGGTTGGAGGGATGGATATGTTGCAACAAGCCAAGACTTTAACATCCAGGCCACACGTTGTGATTGCCACACCGGGAAGGATCAAGGTTTTGCTTGAGGATAATCCTGATATTCCTCCAGTGTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTTCTTGATGTTGGCTTTCAGGAGGATTTGAAATTGATCTTCAATGTTTACCAGAAAGTCGGCAAAAACCTTTTTTTTTCTGCAACTACAACAAGTAATCTACAGAAGCTGCGTGAGCGTTACCAAGACAAACTCTATGTCTATGAGGCCTATGAAGGCCTGAAAAACTTGAGACGCTTGAGCAAACAAATTATATTTGTCCCCAACAAAGTGAAGGAGGTTTATTTAATGCATTTATTGTCCCAAATGGAAGATATGGGCATTCGCTCTGCCATGGTTTTTTTCTCTACATGCAGAGATTGCCATCGATTAAGTTTAATGCTAGAAGTACTTGACCAAGAAGCTGCAGCTCTCTATTCATTCAAATCCCAGACTCAGAGACTTGAAGCACTGAATCAATTTAAATCAGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGAGGATTGGACATTCCTACGGTTGATCTAGTCATCAATTATGATGTCCCAAGGTTTCCAAGGGATTATGTCCATCGTGTTGGTCGGACAGCAAGAGCAGGTAGAGGAGGACTGGCAATGAGTATTGTTACCCAGAATGACATCATCATTCATGAAGTAGAAGCTCTTCTTGAAAGGCAACTGGAGTTGGTTGAATACAAGGAGAATGAGGTGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATGTTGCCGAAATGAAAATGTTGGATGATGGCTTTGAGGAGAAAGCAGAAGAAGAGCGGAAAAAGCAGAAACTGAAAATGCTAGCAGAAAAAGGATTATTAAGGAAAAGGAGCAAAAGAGGAAAAGAAACAAAGGCATGA 1479 0.4307 MDQQVLVDENFPLFSKSHKSSKDHVPAASSATASTAVATKDINFDSQHLGKSDDTDLDFNPTTFGELGLAEWAVKTCKELAMCKPRQVQLHCIPKVLDGCHVLGMMRQKWEDCSICXPILHRLGEHPXGVFALVLTPTRELAYQLAEQFRAXGSCLHVRIAVVVGGMDMLQQAKTLTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQEDLKLIFNVYQKVGKNLFFSATTTSNLQKLRERYQDKLYVYEAYEGLKNLRRLSKQIIFVPNKVKEVYLMHLLSQMEDMGIRSAMVFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALNQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAMSIVTQNDIXIIHEVEALLERQLELVEYKENEVLSLMKKVFSAKNVAEMKMLDDGFEEKAEEERKKQKLKMLAEKGLLRKRSKRGKETKA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3533g00065 495 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 50 484 - -
Pral3533g00065 495 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 299 439 IPR001650 -
Pral3533g00065 495 Pfam Helicase conserved C-terminal domain 304 400 IPR001650 -
Pral3533g00065 495 MobiDBLite consensus disorder prediction 468 495 - -
Pral3533g00065 495 Gene3D - 271 494 IPR027417 -
Pral3533g00065 495 SMART helicmild6 319 400 IPR001650 -
Pral3533g00065 495 MobiDBLite consensus disorder prediction 468 486 - -
Pral3533g00065 495 SMART ultradead3 81 281 IPR014001 -
Pral3533g00065 495 Gene3D - 53 265 IPR027417 -
Pral3533g00065 495 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 211 219 IPR000629 -
Pral3533g00065 495 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 93 265 IPR014001 -
Pral3533g00065 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 417 IPR027417 -
Pral3533g00065 495 Pfam DEAD/DEAH box helicase 116 254 IPR011545 GO:0003676|GO:0005524
Pral3533g00065 495 CDD SF2_C_DEAD 281 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3533g00065 Pral-Chr3533 911151 916499 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3533g00065 63 413 Eukaryotic Initiation Factors Gene Family AT3G13920 29.558 2.77e-41 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3533g00065 K14778 - gmx:100804060 654.055