LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3533g00048	ATGATCAGAAAAGGGACAATCTTTACAGATTCGGTTCAAAAAAACAAAAAATTCGATCGTTTTGTTTGTGATCTTCTTCTTCTTCGCTCCTCAGCTTTCATGGCTTCTTCTAATGTGAAGCCATGGCTTTGTTTGAGCTTTCTCTTCGTTCTTCACACTTCTCTGCTCGCACCAATCTGTAATTGTCAGCCTCAGAACATCGAAACCTTCTTTCCACCTGAAACTTCACCTCCAGCTCCTCCACCGAGCATTTCTCCACCGCCGTCACCTGCAGTTCAGCCGATACCGACGCCGGTGCCGGCGGAAACAACTAGAAGTTCTTCATCATCGAATAGTAAGGTAGGGAGGGCTGTGGCTATTACTGCAGCAAGCACAGTGGTTGTTTCTGCGTTAGTCTTCTTCTTTATCCGATGGTGTTTAAAGAAAAGACGAAGAGATGAGAGACGTGTCACCTCTGCTTCGGAACCTGCTGATGGAAATGGAAGAACTGTTGTTCCTCAGACGAACGCGTTTGAACGAATTGAAGGTAATGTGAAGGGATTGATTGTTGATGAGAATGGTTTGGATGTGATTTATTGGAGGAAGCTTGAAGAGAAGAATAGGTCCAAGAAGGGATTACAGAGGGAGGTTCGAACTATCGCTAAAGAACAAGATCAAGAACAAGAAGTAGAGGTTGTAACAGAAGATGATGATTATGATGGGTATGGAAGAAAGCATCGCCGGAAAAAATCTGGGCCTGTTCAAGAAATTCCTCTGCTTCGTGGGAAATCTTCGGCTTCCGAGAAGAATTTAATATCAGAAGATGAACATGGGTCGAATCGGAGTTGGAGGAGAACGTTTTCTCGAAAAACAGCAGCCACTCCCCCTCCTCCTCCGGTGACGACGACGGCGACTGTTTCACCGCCATTACCACCACCGCCCGCCGCTTATTTTTCTGCTGTTTCAAAAGCGAAAAACAGTGAACCGCCACCGCCACCACATCATGTTACTGCTTCTTCTTCTTCTTCTTCTGTTTCACCACCATTACCACCACCGCCCTCTGCTTACTTTTCTGCTGCTAACAAAACGAAAACCACTGAACCACCGCCTCCACCTCCTCCTCCGTCAATTCCAGATAAAAAAGGTCCGGCGCCGCCTCCCCCACCTCCACCTGCGCCGGCTAAAAAGAGTCCAGCACCACCACCAGCTCCGCCCATGGCCGGAAGCTCAAGGTCATCTTCAAAACCACCACCTACCCCAGTTGAAATGTCAGGGGAAGACAATGATAAGGTGAAACTAAAACCTTTACATTGGGATAAAGTCACCACCAACGTTGATCATTCCATGGTTTGGGACAAGTTGAATCGTGGCTCCTTCAGGGTGGATCAAGATCTTATGGAAGCTCTTTTTGGATATGTGGCTACAAGCAAAAGAACCAAGAACAATTCAACTAGTCCAACCAAGGAGGTTTCTGCACAATCAAGCACAACTTTCATTCTTGATTCCAGGAAATCACAGAATATTGCTATTGTCTTGAGATCTTTAGCTGTGTCGCGACGAGAAATCCTTGATGCCCTTGATGAGGGTCAAGGCCTTAATTCAGATATAATTGAGAAGCTTGTTAGAGTTGCTCCAACACAAGAAGAACAATCTGAAATACTTGATTATAATGGAGACCCTGCAAGACTTGCAGTTGCAGAATCCTTCCTCTATGATATTCTCAAAGCTGTTCCTTCAGCTTTCAAGCGTTTGAATGCTATGCTTTTCAGGTTCAATTATGATTCAGAGGTATTAGAGATCAAGGAATCTTTGAACACACTTGAATTGGCCTGCAAGGAGCTTAGAACTAGAGGGCTTTTTGTGAAACTTCTTGAAGCAGTCCTTAAGGCTGGGAACCGTATGAATGCTGGTACTTCAAGAGGCAATGCTCAAGCTTTTAACTTGACTTCTTTGAGGAAACTCTCTGATGTCAAAAGCACAGATGGGAAAACCACATTGCTTCACTTTGTGGTTGAAGAAGTAGTCCGGTCTGAGGGAAAACGGTGCGTTCTTAACCGCGATTGGAGCCTGAATCGGAGTGGAAGTAGGAAAGTGAACAACAAAGGTGAGTCTGAGAACTCTGCTTCAGATGAACAGAGAGAAATGGAATACCTAAAGTTAGGATTACCATTTGTTGGAGGAATTAGTACTGAGTTCTCCAATGTGAAGAAAGCAGCCATTATTGATTATAATAGTTTAGTTGCTTCAATATCATCCCTCTCCACTCGGATAGCAGAAATCAAACAACTAGTTTCACAGTGTGGGAATGGTAAAGGAGGGAACTTTGTGAGAGAAATGGACCATTTTCTGAGAAGTGCTGAGGAAGAATTGAGATCAGTGAAAGATGAGCAAACAAGGGTAATGCAGATTGTGAAGAAAACAACGGAGTATTATCAAGGAGGAGCTTCAAAAGAGAAAGCAGAGAATCTTCTGGAAATTTTTGTCATCATTAAGGATTTTCTGGGAATGGTTGATCAGGCCTGTATTGACATTGCTCGTAATATGCAGAAGAGGAAGAAAACAAAATCAAATTCTGGGTAA	2559	0.4396	MIRKGTIFTDSVQKNKKFDRFVCDLLLLRSSAFMASSNVKPWLCLSFLFVLHTSLLAPICNCQPQNIETFFPPETSPPAPPPSISPPPSPAVQPIPTPVPAETTRSSSSSNSKVGRAVAITAASTVVVSALVFFFIRWCLKKRRRDERRVTSASEPADGNGRTVVPQTNAFERIEGNVKGLIVDENGLDVIYWRKLEEKNRSKKGLQREVRTIAKEQDQEQEVEVVTEDDDYDGYGRKHRRKKSGPVQEIPLLRGKSSASEKNLISEDEHGSNRSWRRTFSRKTAATPPPPPVTTTATVSPPLPPPPAAYFSAVSKAKNSEPPPPPHHVTASSSSSSVSPPLPPPPSAYFSAANKTKTTEPPPPPPPPSIPDKKGPAPPPPPPPAPAKKSPAPPPAPPMAGSSRSSSKPPPTPVEMSGEDNDKVKLKPLHWDKVTTNVDHSMVWDKLNRGSFRVDQDLMEALFGYVATSKRTKNNSTSPTKEVSAQSSTTFILDSRKSQNIAIVLRSLAVSRREILDALDEGQGLNSDIIEKLVRVAPTQEEQSEILDYNGDPARLAVAESFLYDILKAVPSAFKRLNAMLFRFNYDSEVLEIKESLNTLELACKELRTRGLFVKLLEAVLKAGNRMNAGTSRGNAQAFNLTSLRKLSDVKSTDGKTTLLHFVVEEVVRSEGKRCVLNRDWSLNRSGSRKVNNKGESENSASDEQREMEYLKLGLPFVGGISTEFSNVKKAAIIDYNSLVASISSLSTRIAEIKQLVSQCGNGKGGNFVREMDHFLRSAEEELRSVKDEQTRVMQIVKKTTEYYQGGASKEKAENLLEIFVIIKDFLGMVDQACIDIARNMQKRKKTKSNSG	852

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3533g00048	852	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	416	852	IPR015425	-
	Pral3533g00048	852	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	489	847	-	-
	Pral3533g00048	852	Coils	Coil	769	789	-	-
	Pral3533g00048	852	PANTHER	FORMIN-RELATED	334	842	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	686	705	-	-
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	358	400	-	-
	Pral3533g00048	852	Pfam	Formin Homology 2 Domain	420	830	IPR015425	-
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	285	309	-	-
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	71	97	-	-
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	216	427	-	-
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	71	112	-	-
	Pral3533g00048	852	Coils	Coil	196	216	-	-
	Pral3533g00048	852	Coils	Coil	590	610	-	-
	Pral3533g00048	852	MobiDBLite	consensus disorder prediction	261	276	-	-
	Pral3533g00048	852	Gene3D	Formin, FH2 domain	426	851	IPR042201	-
	Pral3533g00048	852	SMART	it6_source	416	845	IPR015425	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3533g00048	Pral-Chr3533	643505	646635	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3533g00048	403	845	FH2 protein (formin) Gene Family	AT1G70140	59.865	5.00e-180	535

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3533g00048	-		-	pcin:129296125	787.719