Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3533g00039 ATGAAGAGGTCTAGAGACGATGGTTATGTGAGCTCTCAACTCAAACGGCCCATGGTGTCTTCAAGAGCGGAAGCCCCGGGGCAACCCCAGATGATTGGCGGAGGTGCTCAGAAACTAACAACTAATGATGCTTTACTCTATCTCAAGGCCGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGATGACTTTCTGGAAGTCATGAAAAATTTCAAGGCACAAAGAATTGACACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATATTGGGATTCAACACCTTCCTGCCGAAAGGATATGAAATCACACTTCCACTGGAGGAGGAACAGCCTCCTCAAAAGAAGCCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATTAAGGCTCGGTTTCAGGGCGATGATCATGTTTACAAATCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACTGAGGTCTATCATGAGGTTGCTGCTCTTTTCCAAGACCATCAAGACCTCCTTGTTGAGTTCACTCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTGCTCGGAACTCCTTGCTTCGTGATAGGGGCTCTGCAATGGCAGTGCGTCAAATGCATGTTGACAAGAGGGAAAGGACCATGGCCTCACATGACCGTGAACATAGTGCTGATCATCCTGATCCAGATGACAGAGGTTTTATGAGGACAGAAAACGAGCTAAGGAGGCGTGGCGAGAAGGAAAAAGACCGTAGGGACGATAGAGACAGGAAAGAGCGGGGACGGGATGATAGAGATTATGACCATGATACTAGTCGGGACTACAGTATGCAGGAGTTCCCCCACAAACCAAAACATGGTGGTAGGGGCGATGATTTTGGCACTGAACCTCTGCATCAAGGAGGTGATGCTGATGAACATTTTGGTCTGCGCAGTATGTCATCGTCTTGTGATGATAAAAGTTCTGTGAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAGGAATTCTTGAAGTGCCTGCATATCTATAGCAGGGAAATAATCACGCGTCAAGAATTGCAGTCATTGGTGGGGGATTTACTGGGAAAATATCCTGACCTTATGGAGGGGTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTAATGAATAAAAAATCCTTGTGGAATGAAGGACATGCACCAAAATCAGTGAAGGCAGAAGATCGGGACAGAGATAGAGATCGTGATCGTGGTCGGGATGATGAGGTTAAAGAAAGGGATCGTGAATACCGAGAAAGGGACAGATCTGCTGCCATTGCCAACAAGGATGTTTCAGGTTCTAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTGTGAGCGATGCACTCCAAGTTACCGGCTCCTACCAAAAAATTACCCAATACCTGTGGCCAGCCAGAGAACAGAGCTTGGTGGTGAAGTATTGAATGATCATTGGGTATCTGTGACATCTGGAAGTGAAGACTATTCTTTTAAACACATGCGGAAAAACCAGTATGAAGAGAGCTTGTTTCGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAATCTGTGAATGTGACAACAAAGCGAGTAGAAGAGCTCTTGGAAAAGATCAACAATAATATAATCAAAACAGAATGTCCAATCCGAATTGAGGAGCACTTAACAGCTTTAAATCTTAGGTGCATTGAACGCTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTAAGAAAGAATGCTCCTCTAGCTTTGCCAGTTATACTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGAGCTGATTTTAATAAAGTCTGGGCTGAAATATATGCCAAGAATTATCACAAATCTCTTGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACTAAAGCCTTGTTGGCAGAAATTAAAGAAATTAGTGAGAAGAAACGTAGAGAAGACGATGTTCTTCTCGCCATTGCTGCTGGAAATAGACGGCCCATTCTTCCAAATTTGGAATATGAGTTTTCGGATCCAGATATTCATGAAGATCTGTATCAGCTCATAAAATATTCATGTGGAGAAGTTTGTACGACTGAGCAGTTGGATAAAGTTATGAAGATTTGGACAACATTTATAGAGCCCATGCTTGGTGTTCCTCCTCGACCTGAAGGTGCTGAGGACACAGAAGATGTTGTCAAGGCAAAGAACAATTCCGTCAAAAGTGGTGCTGCAAGTGTTGCCGAGAGTAATGGTAGTCCAGGTAGTGGTGCTACCATAATGAATTCTAAACAATTAAGTGCTTCTAGAAATGACGAGGAGAATATTCCATTAGAACAGTCAAACTCTTGCAAAGCATGGCAAATGAATGGAGATGGTGGGGTTAAAGATGATAACTGTGTTGACACAGACCATACAACTAGGAAGACTGAAACTTTGGGAAGCAGCACGCAGCTTTGTAAAATGCAAGCTAGTGCATCCGTGCCTGATGGAGGATCAGGAGTCAATAAGCAAGAGCATCCTAATGATCGGTTAGTGAATGCAAATGCCTCATTTGCCACCGGAATGGATCACAGTAATGGAAGAACATGCATTGATAATGCATCAGGGCTTACTCAATCTAGACCTGCTGTTGAGGGAGGACTTAATTTACCTTCATCGGAGGGTGGTGATTCTACTAGACTAGGAGCATCTATGAATGGGACCATCACTGAAGGCCCCAAAGTTCAAAGATACCAAGAAGAACCAGTTGGACAGTTGAAGGGTGAAAGAGAAGAGGGTGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCAGTTTACAGGGATTCTGGTTTGGAGGCAATGAGTAAAGGCAAGGATGGTGGTATGATTCAACAATACCAAAATAGACATGGAGAAGAAGTTTGCGGTGTAGCTGGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCATCAAAGGTCATTGGAGGACAGTGAAAATGCTTCTGAAAATGGGGATGTTTCTGGTAGTGAGTCTGCTGATGGCGAGTGTTCTCGAGAAGAACATGAAGATGGTGAACACAAGGTTGAGAGTGAAGGTGAAGCAGAAGGAATGGCCGATGCCAATGATGTTGATGGCGATGGATCTCTATTGCCATTTTCAGAACGCTTTCTCCTAACTGTGAAGCCTCTGGCAAAGTACGTTCCTGCAGCTTTGCATGAGAAAGAAGAGAATTCTCAGATTTTTTATGGAAATGACTCCTTTTATGTGCTTTTCAGACTCCACCAGACATTATATGAGAGGATACAATCAGCAAAGATAAACTCTTCATCTGCTGAAAGAAGGTGGAAGGCTTCAAATGAAACAAATTCCACTGATCAGTATGGCAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGCAGAGCTGTTATTGGAACTCAATCTTATGTCTTATTCACCTTAGACAAGTTGATATATAAACTTGTTAAACAGCTTCAAGCTGTGGCAACTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTTTATCATGAAAATGCCCGTGTGCTTCTTCATGATGAGAACATATATCGAATTGAATGTTCATCTACACCATCCCGATTATCCATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACTGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTGTTCCTGACAAAAAGGAAAAGTCTGGGATTTTCCTGAAGAGGAATAAACGCAGATATGCATGTAGTGATGAATATTCAAGCCAGGCCTTGGAAGGACTACGAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAGTTCATCGAAGGTTTCATATGTTTTAGATACCGAAGACTTTTTGTTCCGGATGAGAAGGAAAAGGAAAACTTTGCATCAAAACGGTTTATGCCATGAACAGGCAAAGTCCTCAAACATTTGTTCAAGCAGAGCACAGCGGTTCCGCAGATTGTTTCCTGTTACATGA 4275 0.4206 MKRSRDDGYVSSQLKRPMVSSRAEAPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEEEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVAALFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRDRGSAMAVRQMHVDKRERTMASHDREHSADHPDPDDRGFMRTENELRRRGEKEKDRRDDRDRKERGRDDRDYDHDTSRDYSMQEFPHKPKHGGRGDDFGTEPLHQGGDADEHFGLRSMSSSCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLARCEKNDGFLAGVMNKKSLWNEGHAPKSVKAEDRDRDRDRDRGRDDEVKERDREYRERDRSAAIANKDVSGSRMSILSSKDKYMYKPINELDLSNCERCTPSYRLLPKNYPIPVASQRTELGGEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLEKINNNIIKTECPIRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEIKEISEKKRREDDVLLAIAAGNRRPILPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTEQLDKVMKIWTTFIEPMLGVPPRPEGAEDTEDVVKAKNNSVKSGAASVAESNGSPGSGATIMNSKQLSASRNDEENIPLEQSNSCKAWQMNGDGGVKDDNCVDTDHTTRKTETLGSSTQLCKMQASASVPDGGSGVNKQEHPNDRLVNANASFATGMDHSNGRTCIDNASGLTQSRPAVEGGLNLPSSEGGDSTRLGASMNGTITEGPKVQRYQEEPVGQLKGEREEGELSPNGDFEEDNFAVYRDSGLEAMSKGKDGGMIQQYQNRHGEEVCGVAGGENDADADDEGEESHQRSLEDSENASENGDVSGSESADGECSREEHEDGEHKVESEGEAEGMADANDVDGDGSLLPFSERFLLTVKPLAKYVPAALHEKEENSQIFYGNDSFYVLFRLHQTLYERIQSAKINSSSAERRWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAVIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENIYRIECSSTPSRLSIQLMDYGHDKPELTAVSMDPNFSAYLHSDFLSVVPDKKEKSGIFLKRNKRRYACSDEYSSQALEGLRVSNGLECKIACSSSKVSYVLDTEDFLFRMRRKRKTLHQNGLCHEQAKSSNICSSRAQRFRRLFPVT 1424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3533g00039 1424 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Pral3533g00039 1424 SMART hdac_interact2seq4b 500 600 IPR013194 -
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 1028 1102 - -
Pral3533g00039 1424 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 795 832 - -
Pral3533g00039 1424 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 429 464 - -
Pral3533g00039 1424 Pfam C-terminal domain of Sin3a protein 1138 1384 IPR031693 -
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 1069 1091 - -
Pral3533g00039 1424 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Pral3533g00039 1424 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Pral3533g00039 1424 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 939 994 - -
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 794 832 - -
Pral3533g00039 1424 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Pral3533g00039 1424 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Pral3533g00039 1424 Pfam Sin3 family co-repressor 502 593 IPR013194 -
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 1042 1056 - -
Pral3533g00039 1424 PANTHER SIN3B-RELATED 37 1282 IPR039774 GO:0003714
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 218 322 - -
Pral3533g00039 1424 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 939 963 - -
Pral3533g00039 1424 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Pral3533g00039 1424 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 212 331 - -
Pral3533g00039 1424 Coils Coil 573 593 - -
Pral3533g00039 1424 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 431 464 - -
Pral3533g00039 1424 FunFam Paired amphipathic helix protein SIN3 337 410 - -
Pral3533g00039 1424 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Pral3533g00039 1424 SUPERFAMILY PAH2 domain 339 406 IPR036600 GO:0006355
Pral3533g00039 1424 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3533g00039 Pral-Chr3533 564474 575918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3533g00039 33 142 WRKY Transcription Factor Family AT4G12020 50.000 8.62e-23 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pral3533g00039 Sin3a_C 8.6e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3533g00039 K11644 - mnt:21394293 2092.78