Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3531g00025 ATGGAAAAGCAAAGTGTTCTGTGTGATGTTTCTTCAACATGGGAAGGTTCAGAAAATGAACACTCCATGGAGAAGAGGTTGAAGCTATTTGGGTTTGAGTTAAATCCATGTAGCAACAAAATTACCAGTTCAAATGAAGGAGACGAAAGTGTGAACTCTTCAACCTCAATTCTGTCTTCTTCTTCATCAGGATCAGAAAGAGCAGACAGATCTGAAGCAGGTCAAGATCAGAAGATCGTTATCGTCACAGAATCATCTTCAAGAGATCAAAAACCTAATAATAATGATAATAATAATAAGATTTCTTCTTCCTCAGATGAGCAGAGAAAGTTCGAGTGCCAATACTGCTTCAAGGAGTTTGTAAACTCACAGGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGAATGAAGAAGAAGAGACTTCAGCTTCAAGCCAGGAAGGCTAGCTTCAACTTATATCTTCAACAACGATCTTTTCAAGCTAGTAATAATTATTATTATCAGTATTATGGATCTGGATCTGATAATAGTAATAATTATAATTCTTCTTCTTGGTTCTACGATCCTTCTTCGTATAACAACTCAGCCGAGTTGTTCAATCTTCATGAAGGATCCCAGATTAGCTTCAGATCTTCATCAAATCCTCATCATCATCCTCGTCGTTCTCTTCAGGAGCCTTCTTGTATGTTTGATTTCTCTCGCACTGATAGGCCTTTCATGTCGGAGACTTCGACCCAGAAAACGAATCATTCTCAGAAAGCTTTGGATCTTCAACTAGGCTTAGCCTTGGAGTCGAATACAAGAATCTAA 816 0.3811 MEKQSVLCDVSSTWEGSENEHSMEKRLKLFGFELNPCSNKITSSNEGDESVNSSTSILSSSSSGSERADRSEAGQDQKIVIVTESSSRDQKPNNNDNNNKISSSSDEQRKFECQYCFKEFVNSQALGGHQNAHKKERMKKKRLQLQARKASFNLYLQQRSFQASNNYYYQYYGSGSDNSNNYNSSSWFYDPSSYNNSAELFNLHEGSQISFRSSSNPHHHPRRSLQEPSCMFDFSRTDRPFMSETSTQKTNHSQKALDLQLGLALESNTRI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3531g00025 271 MobiDBLite consensus disorder prediction 1 21 - -
Pral3531g00025 271 MobiDBLite consensus disorder prediction 78 102 - -
Pral3531g00025 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Pral3531g00025 271 MobiDBLite consensus disorder prediction 1 17 - -
Pral3531g00025 271 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Pral3531g00025 271 Gene3D Classic Zinc Finger 85 166 - -
Pral3531g00025 271 PANTHER ZINC FINGER PROTEIN 5 14 266 IPR044299 GO:0010090
Pral3531g00025 271 MobiDBLite consensus disorder prediction 41 68 - -
Pral3531g00025 271 MobiDBLite consensus disorder prediction 41 106 - -
Pral3531g00025 271 SUPERFAMILY beta-beta-alpha zinc fingers 108 138 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3531g00025 Pral-Chr3531 276924 278001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3531g00025 84 167 C2H2 Transcription Factor Family AT5G06650 48.810 1.88e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3531g00025 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3531g00025 - - adu:107488933 177.948