Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3529g00016 ATGATCCGAGAACTGAATGAGTCCAATCGCCGGATTCTGACCTTCCCGGCGGTTCATCCTTGTGAAGATATTTCTTTTCCCACACTTGTCACTTCTTTATTCACTATCTCTCGTAGGATTTGCAGTTTCAAATCCAAAGTTTTCTCCAGTAACAAGAAAAATGCCAGGAAAGCCATTCGTATGATAGAGGTTCTTCAGATTTTTCTGGAAGAGATCCGAGACCAGCAATGGAGTTTTCCGGATTCCGTAATCCTGAGCTTGTCGGAGCTCCATTTGACTTTCCAGAAGCTTCACTACCTCCTTCAAGACTGCACTCGTGAAGGCTCTCGGCTATATCTGCTCATGGAGTCGGATCGGGTCGCGACCCAGTTTCAGGTCCTATCTAGATCCGTAGTCACGGCTCTGGATATCTTCCCTTTCAGTTCCACAGAAATCTCAGCAGAACTTCAAGAGCAGGTTGAGTTTATGCTGAAGCAAGCTCGAAAGGGCGACTTTGAAGTGGAGCCAGAAGACAAACGGGCAATGATGAGCGTTCTATCAATTTTGAATCAATTTGAGAACTCGATCGCCCCAAGTGAGGGTGATCTCAGATGGATTCTTGATCATATTGGGGTTCGAAGATGGAATGAGTGTAACAAAGAAATGAAGTTTTTGGATACAGAAATTGGGTATGAGCGAATGAAGGAAGAGAAAAGAAAGCTAGCTTTTTTGTGTAGTTTAATGGGGTTCCTGAGTTACTGCAGATGCGTAGTGATCGAGGTTGTCGATAATGGAGAAGATGACCCAAAATCTGATGGTAGCAAAGGAAGTGAGATTCTGAGTTGGTGCTTCAACCCAGATGATTTTCGATGTCCAATCTCTCTAGAAATCATGAATGATCCAGTGACAATAGAGACGGGTCATACTTATGATCGATCTTCGATTCTCAAATGGTTCAGCAGTGGAAGCCTCATATGCCCCAAGACAGGGAGAAACCTTGACAGCATCGAACTGGTCCCTAATTTGGTACTTCACAGGTTGATTCATCAATACTGTTCTAATAACGGCGTTCCCATGGCTGATCTGGGTCGGAGGAATCGTGATCGCGATATCAAGACAACTTGTCAACCTGGAAGTTTGGCAGCTCAAGAAGCCATGAAAATGCTGGCAAGTTTTCTCAATGACAAGCTTCAAAACAACGCGGAGTTTGAGAGAAACAGGGCTGCTTATGAGATTCGTGTTCTTGCCAAAAGAAACATCTTCAATATTTGTTTTGTGGAATCTGATACAATACCGCATCTGTTAACGTTATTCGTCAAGAATCCAACGACACAAGAAAACGCCATTGCAGCTCTTCTGAACCTCTCGAAACACCCTAAAAGCAGAATTATTATGGTTCTTGATGGGGGTTTGGAGTTGATTGTGATTGTTTGTAAGAAAGGAATGAAGTTAGAATCTCGCCATCATGCTGCTGCAACATTATACTACCTTGCTTCAGATGAGGAGAATCGAAGATTGATAGGGGAGGAGCCAGAGGCAATCCCATCTTTGATCAATCTACTCAAAGATGGCTCTGATAGAAGCAAAAAGAATGGCTTGGTTGCTATATATGGTCTCCTTTTTCACTCTGAAAATCACAAGAGAGTGCTTGAAGCTAAGGCAATCCCATTGCTAGTTAGCATCTTAAAAACCTGTGAAAGAGAAGAGTTAGTCACAGATTCATTAGCAGTACTGGCAAGTCTAGCAGAGAAAAGTGCTGGAGCAATGGCAATCCTTGAAAATGGAGCTTTGCATCCAACTAGAGACTTGAATTCTTCTTCAACTTCAAGAGTTGGGAAGGAGCAAGGAGTGTCTTTATTGCTTTCTCTAGCAGTAACTGGAGGGGCAAATGTGGTTGCTCTTCTAGTGAAAAGCCCTTCTCTAATGGGATCCTTATATTCCTTACTCAGTGAAGGCACATCTAGAGCAAGCAAGAAGGCCAGTACTCTCATCAGGGTCCTCCATGATTTCTGTGAAAGGAGACCCTCAGGATTCAAAGCTTCAGTTCTTCCACAAGAACAATCTATTCACGTTTGGTAA 2058 0.432 MIRELNESNRRILTFPAVHPCEDISFPTLVTSLFTISRRICSFKSKVFSSNKKNARKAIRMIEVLQIFLEEIRDQQWSFPDSVILSLSELHLTFQKLHYLLQDCTREGSRLYLLMESDRVATQFQVLSRSVVTALDIFPFSSTEISAELQEQVEFMLKQARKGDFEVEPEDKRAMMSVLSILNQFENSIAPSEGDLRWILDHIGVRRWNECNKEMKFLDTEIGYERMKEEKRKLAFLCSLMGFLSYCRCVVIEVVDNGEDDPKSDGSKGSEILSWCFNPDDFRCPISLEIMNDPVTIETGHTYDRSSILKWFSSGSLICPKTGRNLDSIELVPNLVLHRLIHQYCSNNGVPMADLGRRNRDRDIKTTCQPGSLAAQEAMKMLASFLNDKLQNNAEFERNRAAYEIRVLAKRNIFNRXCFVESDTIPHLLTLLXVKNPTTQENAIAALLNLSKHPKSRIIMVLDGGLELIVIVCKKGMKLESRHHAAATLYYLASDEENRRLIGEEPEAIPSLINLLKDGSDRSKKNGLVAIYGLLFHSENHKRVLEAKAIPLLVSILKTCEREELVTDSLAVLASLAEKSAGAMAILENGALHPTIXDLNSSSTSRVGKEQGVSLLLSLAVTGGANVVALLVKSPSLMGSLYSLLSEGTSRASKKASTLIRVLHDFCERRPSGFKASVLPQEQSIHVW 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3529g00016 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
Pral3529g00016 688 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Pral3529g00016 688 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Pral3529g00016 688 SUPERFAMILY RING/U-box 279 352 - -
Pral3529g00016 688 Pfam Armadillo/beta-catenin-like repeat 416 451 IPR000225 GO:0005515
Pral3529g00016 688 Gene3D - 366 669 IPR011989 -
Pral3529g00016 688 Coils Coil 386 406 - -
Pral3529g00016 688 CDD RING-Ubox_PUB 279 331 IPR045210 -
Pral3529g00016 688 PANTHER U BOX DOMAIN-CONTAINING 50 663 - -
Pral3529g00016 688 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Pral3529g00016 688 SUPERFAMILY ARM repeat 388 673 IPR016024 -
Pral3529g00016 688 Pfam U-box domain 279 348 IPR003613 GO:0004842|GO:0016567
Pral3529g00016 688 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Pral3529g00016 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Pral3529g00016 688 SMART arm_5 453 494 IPR000225 GO:0005515
Pral3529g00016 688 SMART arm_5 537 578 IPR000225 GO:0005515
Pral3529g00016 688 SMART arm_5 495 536 IPR000225 GO:0005515
Pral3529g00016 688 SMART arm_5 411 452 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3529g00016 Pral-Chr3529 179185 181550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3529g00016 1 688 U-box Gene Family AT1G60190 44.269 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3529g00016 - - gmx:100795816 798.119