Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3527g00018 ATGCCAGGCTTGGAGGCAGCAGCAGTGGAGGGATTCAGAACCTTGACTGAGACTAAAGCTTGGGACTATGTTGTAGTATGGAAGTATGGCGATGATCCAACAAGATTTATTGAGTGGATGGGCTGCTGTTGTGTTGGGGGATGTAATGGAGGCAAGAACGAAGAGGAAAAGGAGGAAGAACATAGACTGGGTCGTAGATGTAGGGATAGTCACTATCAGCATCCAGTGAGAACCAAGGCTTGTGAGGCCCTTGCTCTGCTTCCTTATACAATGCCACTTTATTCTGGTGTTCATGGAGACGTGGCAATATCAAAACAACCTCAATGGCTTTCCCAGGATTCAACAGGAACGCAAGTTTTGATCCCTATTATTGGTGGTATTATAGAGCTCTTCTCAGCAGAGACTGTACCAAAAGATTCAAGGATCATAGAGTTGATAACTGCACGTTGCTGTCTCCCTATGAAAAATGAAGCCATTTCTGAACATCCACCGTTAGATTCATGCTACCCACAAAGCTTAATTTCTAGCATACACACATCTGCAGTAGAGCAGTGCATCTCTCACCCAAGCATTGAAGGATCCTCCAGTGGATCATATCCTTCAAATGAAACTCCAAAAGAACATCAAAGAGGTTTGGATTTCCAGTGCGGCACTCTGGAAGAAGATAAACCAGAGTTGGTCAGAAGACCTCAAAGGGAATTCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAGCAGGATAAAAGATGGGCTTTATGCTCTACGAGCTTTGGTCCCAAAGATAACCAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAAGAACAAGAAAAAGGACTTAGACACAAGATCACAGCTTTGGAAGAAGAGGATCATAGAAAGAACAAACCACAGTGGAGGAGGCCAATATTGAAGGAACAAAGAGGAACCAGAAGTTTGCATCTTGATGAGCCCATCCAAAATTCCTCTGATTCCACAAAAAGGACCCAGATGGAGGTGCAGGTTGAAGTGAACCAGATTGGGAAGAGAGAGTTTCTTGTGAAGATACAATGTGAGAAGAAGAGAGGAGGGTTTGCAAGATTGATGGAGACTATCCATTTGTTTGGACTGCAGGTAACTGATGCCAATGTGAACGCTTTCGGTGGCGAAGTAGTGAATATTCTGACTGTTAAGGCAAATAAGCTTGATATTCACCCAGACATTTTGAGAGATTATTTAACTAAGCAAGCTGGTTCTCAAGAAAGAGGAGTTGATGTTGAGTTCACGAAGGCTTAA 1305 0.4307 MPGLEAAAVEGFRTLTETKAWDYVVVWKYGDDPTRFIEWMGCCCVGGCNGGKNEEEKEEEHRLGRRCRDSHYQHPVRTKACEALALLPYTMPLYSGVHGDVAISKQPQWLSQDSTGTQVLIPIIGGIIELFSAETVPKDSRIIELITARCCLPMKNEAISEHPPLDSCYPQSLISSIHTSAVEQCISHPSIEGSSSGSYPSNETPKEHQRGLDFQCGTLEEDKPELVRRPQREFYTSKNLVTERNRRSRIKDGLYALRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRHKITALEEEDHRKNKPQWRRPILKEQRGTRSLHLDEPIQNSSDSTKRTQMEVQVEVNQIGKREFLVKIQCEKKRGGFARLMETIHLFGLQVTDANVNAFGGEVVNILTVKANKLDIHPDILRDYLTKQAGSQERGVDVEFTKA 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3527g00018 434 MobiDBLite consensus disorder prediction 190 209 - -
Pral3527g00018 434 Pfam Helix-loop-helix DNA-binding domain 242 284 IPR011598 GO:0046983
Pral3527g00018 434 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Pral3527g00018 434 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 235 298 IPR036638 GO:0046983
Pral3527g00018 434 MobiDBLite consensus disorder prediction 299 339 - -
Pral3527g00018 434 Gene3D - 230 310 IPR036638 GO:0046983
Pral3527g00018 434 Coils Coil 280 300 - -
Pral3527g00018 434 MobiDBLite consensus disorder prediction 190 205 - -
Pral3527g00018 434 SMART finulus 240 289 IPR011598 GO:0046983
Pral3527g00018 434 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 142 410 - -
Pral3527g00018 434 MobiDBLite consensus disorder prediction 324 339 - -
Pral3527g00018 434 MobiDBLite consensus disorder prediction 299 323 - -
Pral3527g00018 434 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 147 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3527g00018 Pral-Chr3527 109347 111514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3527g00018 91 418 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 33.333 1.31e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3527g00018 bHLH-MYC_N 5.5e-15 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3527g00018 - - pcin:129321737 646.351