Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3522g00004 ATGCAATTCGCAAAGCTCGACGACTCTCCTATGTTTCGCAAGCAGATACAATGCCTGGAGGAGAGTTCAGAATCTTTGAGAGAGAGAAGTTTGAAATTTTACAAAGGGTGCAGAAAATACACTGAAGGACTTGGGGAGGCATATGATGGTGACATTGCATTTGCAAGTGCTTTGGAAACTTTTGGTGGAGGCCATAATGATCCCATCAGTGTTGCTTTTGGAGGTCCTGTTATGACCAAATTCACTATAGCCTTGAGAGAAATTGGGACATACAAAGAAGTCCTTCGTTCACAGGTTGAACATATGCTAAATGACAGATTACTCCAATTTGTTAATATCGATTTGCATGAAGTCAAGGAGGCACGCAAGCGTTTTGACAAAGCCAGTCTTATTTATGATCAAGCTCGTGAAAAGTTCCTGTCTTTAAGAAAAGGCACAAAAACAGATGTAGCTACTGCTCTTGAAGAGGAGCTTCATAATGCAAGATCCACATTTGAGCAAGCTCGATTTAATTTGGTTACAGCTTTGTCAGCTGTTGAAGCCAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGATGCACATCTTCGCTACTTCAAACAGGGTTACGAGTTATTGCACCAAATGGAGCCATATATTAACCAGGTCCTGACATATGCTCAGCAGTCAAGAGAGAGATCCAACTATGAGCAAGCAGCTCTAAATGAAAGAATGCAAGAGTACAAAAGGCAGGTTGATCGTGAGAGTAGGTGGTCCTCAAATGGTTCTAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGCTCACATAAAATGATAGAGGCAGTTATGCAATCTGCTGCCAAGGGAAAGGTTCAAACAATTCGACAAGGTTATCTTTCAAAGCGGTCTTCAAACTTAAGGGGTGACTGGAAAAGGAGGTTTTTTGTTCTTGACAGTCGGGGAATGTTGTATTACTATCGTAAGCAGTGCAGCAAATCTGGGTCTAGCAGTCAACATTCTGGTCAGAGGAATAGTTCTGAGCTTGGTTCTGGGCTCCTGAGCCGATGGCTGTCTTCTCATCATCATCATCATCATGGTGGTGGTGTGCATGATGAAAAATCTGTTGCTCATCACACAGTGAATCTGCTTACGTCTACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGCTTCAGAATCATTTCGCCAACAAAGAACTACACTTTGCAGGCAGAGAGTGCATTGGACCAAATGGATTGGATTGAAAAGATCACTGGTGTTATTGCTTCATTGCTGAGTTCTCAGATTCCTGAAAGGTGTCTCCCTGCTAGTCCTATGGGAAGTGGTCATAATAGGTCTGCCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTTGATCACTCTGCTGTGGAAGAATATAAATCGGACAGAGGTCTTGCTTCTGCACATATGGAACGCCCCTCAAGAAGCTTGCAGCAGCAGCAACGACCATGTATAAAAAATGAGAAGCCAATTGATGTTTTGCGACGAGTTTGTGGAAATGATATATGTGCTGATTGTGGGGCGCCTGAACCTGATTGGGCATCATTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCACCGAAATCTTGGTGTACACATATCAAAGGTTAGGTCTCTAACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTGTTTCAATCACTTGGGAATACTTTTGCCAACTCAGTCTGGGAGGAATTGTTGCATTCAAGAAGTGCCTTTCAGATTGATCTTGTCCCCACAGGCTTAAGTAAGTCCGACAAACCACAGGTTCTCTTCATCAGCAAACCTTGTCAGTCTGATTCTTTATCTGTGAAGGAAAAGTTCATCCATGCAAAGTACGCAGAGAAGCTTTTTGCTCACAAGTCAAAAGACAATCAATATCGTCTCTTGGTGGCACAACAGATTTGGGAAGCTGTTCGTTCTAATGACAAAAAAGCTGTGTACCGCTACATTGTTAATTATGAAGTTGATGTTAATGCTGTTTATGAGCAAACATGCAGCTCTTCTTTAACCCTTGCCAGAGTGATGCTATTACAAGAGCAGACAGGCCGTGATCACAACTCTAGTTTAGTAGGGAACTCATTCGATTGGTCCTCTACTTGTCCCCTGAATATGGTGGGAGCAAAAGACGATCAGACGATGAATGATCTTGATGGGTGTACCCTACTTCACCTTGCTTGTGAAACAGCTGACATTGGCATGCTGGAGCTTCTTCTTCAGTATGGTGCAAATATTAATGCCACTGACATGAGAGGCCAAACACCTCTCCACCGCTGCATTCTCAAAGGAAGATCTACATTGGCAAGATTACTTCTCTCAAGGGGAGCTGAACCTCAAGTTGCTGATGAAGAGGGAAGAACCCCCCTTGACCTTGCTGTACGGTCAAACTTTGATGACAATGAAGTGCTTGCTTTATTATCTGATTCAAATGGATAA 2505 0.4255 MQFAKLDDSPMFRKQIQCLEESSESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHEVKEARKRFDKASLIYDQAREKFLSLRKGTKTDVATALEEELHNARSTFEQARFNLVTALSAVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQVDRESRWSSNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSGSSSQHSGQRNSSELGSGLLSRWLSSHHHHHHGGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERCLPASPMGSGHNRSASESSSFESSDFDHSAVEEYKSDRGLASAHMERPSRSLQQQQRPCIKNEKPIDVLRRVCGNDICADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLHSRSAFQIDLVPTGLSKSDKPQVLFISKPCQSDSLSVKEKFIHAKYAEKLFAHKSKDNQYRLLVAQQIWEAVRSNDKKAVYRYIVNYEVDVNAVYEQTCSSSLTLARVMLLQEQTGRDHNSSLVGNSFDWSSTCPLNMVGAKDDQTMNDLDGCTLLHLACETADIGMLELLLQYGANINATDMRGQTPLHRCILKGRSTLARLLLSRGAEPQVADEEGRTPLDLAVRSNFDDNEVLALLSDSNG 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3522g00004 834 SUPERFAMILY PH domain-like 207 430 - -
Pral3522g00004 834 Gene3D - 647 830 IPR036770 -
Pral3522g00004 834 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Pral3522g00004 834 PRINTS HIV Rev interacting protein signature 558 579 IPR001164 GO:0005096
Pral3522g00004 834 PRINTS HIV Rev interacting protein signature 535 552 IPR001164 GO:0005096
Pral3522g00004 834 PRINTS HIV Rev interacting protein signature 516 535 IPR001164 GO:0005096
Pral3522g00004 834 MobiDBLite consensus disorder prediction 444 466 - -
Pral3522g00004 834 MobiDBLite consensus disorder prediction 253 269 - -
Pral3522g00004 834 MobiDBLite consensus disorder prediction 246 270 - -
Pral3522g00004 834 ProSiteProfiles ARF GTPase-activating proteins domain profile. 504 649 IPR001164 GO:0005096
Pral3522g00004 834 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Pral3522g00004 834 ProSiteProfiles Ankyrin repeat profile. 741 773 IPR002110 GO:0005515
Pral3522g00004 834 SUPERFAMILY Ankyrin repeat 660 822 IPR036770 -
Pral3522g00004 834 Pfam PH domain 294 430 IPR001849 -
Pral3522g00004 834 Coils Coil 151 171 - -
Pral3522g00004 834 SMART PH_update 293 433 IPR001849 -
Pral3522g00004 834 Pfam BAR domain of APPL family 6 232 IPR004148 GO:0005515|GO:0005737
Pral3522g00004 834 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 485 650 - -
Pral3522g00004 834 SUPERFAMILY ArfGap/RecO-like zinc finger 503 644 IPR037278 -
Pral3522g00004 834 SMART arf_gap_3 504 649 IPR001164 GO:0005096
Pral3522g00004 834 ProSiteProfiles Ankyrin repeat profile. 774 806 IPR002110 GO:0005515
Pral3522g00004 834 MobiDBLite consensus disorder prediction 450 466 - -
Pral3522g00004 834 ProSiteProfiles PH domain profile. 292 431 IPR001849 -
Pral3522g00004 834 ProSiteProfiles Ankyrin repeat region circular profile. 774 806 - -
Pral3522g00004 834 CDD BAR_SFC_plant 14 215 IPR035670 -
Pral3522g00004 834 Pfam Ankyrin repeats (3 copies) 746 830 IPR002110 GO:0005515
Pral3522g00004 834 PANTHER CENTAURIN/ARF 3 832 IPR045258 GO:0005096
Pral3522g00004 834 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Pral3522g00004 834 Gene3D - 285 441 IPR011993 -
Pral3522g00004 834 CDD ArfGap 507 636 - -
Pral3522g00004 834 CDD PH_ACAP 295 435 - -
Pral3522g00004 834 Coils Coil 227 247 - -
Pral3522g00004 834 Gene3D Arf GTPase activating protein 484 646 IPR038508 -
Pral3522g00004 834 SMART ANK_2a 774 803 IPR002110 GO:0005515
Pral3522g00004 834 SMART ANK_2a 741 770 IPR002110 GO:0005515
Pral3522g00004 834 SMART ANK_2a 807 834 IPR002110 GO:0005515
Pral3522g00004 834 Coils Coil 118 138 - -
Pral3522g00004 834 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Pral3522g00004 834 ProSiteProfiles Ankyrin repeat region circular profile. 741 772 - -
Pral3522g00004 834 Pfam Putative GTPase activating protein for Arf 507 644 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3522g00004 Pral-Chr3522 309926 322328 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3522g00004 516 645 C2H2 Transcription Factor Family AT4G21160 41.985 1.32e-20 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3522g00004 K12489 - gmx:100789134 1390.56