Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral34g00003 ATGGTAAAAAAGATTGAAATGTCGGAAGCAGATGAGTACCGCTGCTTTATTGGTGGCCTTGCATGGTCAACATCCGATAGGAAGCTGAAGGATACATTTGAAAAGTTTGGCAAACTTCTTGAGGCAAAGGTGGTTGTGGACAAATTCTCTGGGCGCTCTCGTGGCTTTGGATTTGTTACGTTTGATGAGAGGAAAGCAATGGAAGAGGCTATTGAGGCTATGAATGGCATGGATTTAGATGGTCGAACTATCACTGTTGATAAAGCTCAGCCTCAACAAGCATCTGCTAGAGATGATGGTGATCGTTACCGTGAAAGGGGTCGTGATCGGGATCGTGATCGTAACCGAGATTATGGAGGTGGTCGAAGCTCTAATGGTGGTGAATGTTTTAAATGTGGTAAACCTGGTCATTTTGCCAGGGAGTGCCCTAGTGAAGGAGCAGGAGGGGGCAAGTATGGTGGCAGGGAAGGTAGGTATGGTGGCAGGAGTAGTGGTGGTAGTCACTATGGTCCTGATAGGAATGCAGATCGTTATTCTGGTGGGCGCAACAGGGACTCAGGTAGTCACGGAGAATCTGGGAGTGATCGTCGTGATCGTGCTGGACCTTATGAACGTCGAGGATCAGGAGGCTTTCGTTCTGGATAG 645 0.4806 MVKKIEMSEADEYRCFIGGLAWSTSDRKLKDTFEKFGKLLEAKVVVDKFSGRSRGFGFVTFDERKAMEEAIEAMNGMDLDGRTITVDKAQPQQASARDDGDRYRERGRDRDRDRNRDYGGGRSSNGGECFKCGKPGHFARECPSEGAGGGKYGGREGRYGGRSSGGSHYGPDRNADRYSGGRNRDSGSHGESGSDRRDRAGPYERRGSGGFRSG 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral34g00003 214 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Pral34g00003 214 MobiDBLite consensus disorder prediction 175 205 - -
Pral34g00003 214 FunFam Glycine-rich RNA-binding protein RZ1A 7 124 - -
Pral34g00003 214 MobiDBLite consensus disorder prediction 85 214 - -
Pral34g00003 214 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Pral34g00003 214 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 91 IPR000504 GO:0003723
Pral34g00003 214 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Pral34g00003 214 CDD RRM2_NsCP33_like 14 89 - -
Pral34g00003 214 Gene3D - 3 124 IPR012677 -
Pral34g00003 214 Gene3D - 125 190 - -
Pral34g00003 214 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN RZ1A 7 210 - -
Pral34g00003 214 SMART rrm1_1 14 87 IPR000504 GO:0003723
Pral34g00003 214 Pfam Zinc knuckle 128 144 IPR001878 GO:0003676|GO:0008270
Pral34g00003 214 SUPERFAMILY Retrovirus zinc finger-like domains 111 148 IPR036875 GO:0003676|GO:0008270
Pral34g00003 214 MobiDBLite consensus disorder prediction 94 119 - -
Pral34g00003 214 SUPERFAMILY RNA-binding domain, RBD 9 121 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral34g00003 Pral-Chr34 8663 11832 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral34g00003 15 90 Eukaryotic Initiation Factors Gene Family AT1G22760 38.158 2.32e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral34g00003 - - gmx:100815224 282.337