Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3499g00001 ATGAGGAAAGGCAGAGCAGCCGCGCCGGTGAAGGCGGCAGCCGGAGTGGACGGAGGATCCGGATCGAGGACGGTTTTAAAAGAGCCGAGGTACCGGGGCGTGAGGAAGAGGCCGTGGGGTAGATTTGCTGCGGAGATCAGAGACCCTGTGAAGAAAGCTCGTTTATGGCTTGGCACCTTTGATTCCGCCGAAGAAGCCGCTCGAGCTTACGACGCTGCCGCTCTCAGCCTCCGCGGACCTAAGGCTAAGACCAACTTTCCGATCAACCCTTCTTCTCTCTCACCCTTCTGTTACCACCACAATAATAACAACCTCGCCGATCCGTTTTTAGATCACAGGTTGTATGCTTCTAATGGCTTCCAGGAGCACCAGATCAATCCTCAGAGACCTACCTCTAGCGGCATGAGCAGCACCGTTGAGTCCTTCAGCGGCCCTCGTCCTCGCTCGATGGCGCCGCCGTTGACCACCACCACCTCCCGGAGATACCCTCGAACGCCGCCCGTTGTGCCAGAGGATTGCCATAGCGACTGCGATTCATCGTCGTCTGTGGTTGACAACGACGGTGATGATATCGCATCGTCCTCTTTCCGGCGGCCTTTCCCCTTCGATCTTAACTTCCCACCGGTCGATGATGATCTTCACTGCACCGATCTGCGTCTCTGA 663 0.5701 MRKGRAAAPVKAAAGVDGGSGSRTVLKEPRYRGVRKRPWGRFAAEIRDPVKKARLWLGTFDSAEEAARAYDAAALSLRGPKAKTNFPINPSSLSPFCYHHNNNNLADPFLDHRLYASNGFQEHQINPQRPTSSGMSSTVESFSGPRPRSMAPPLTTTTSRRYPRTPPVVPEDCHSDCDSSSSVVDNDGDDIASSSFRRPFPFDLNFPPVDDDLHCTDLRL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3499g00001 220 CDD AP2 29 89 IPR001471 GO:0003700|GO:0006355
Pral3499g00001 220 FunFam Ethylene-responsive transcription factor 2 30 89 - -
Pral3499g00001 220 Pfam AP2 domain 29 79 IPR001471 GO:0003700|GO:0006355
Pral3499g00001 220 SUPERFAMILY DNA-binding domain 30 88 IPR016177 GO:0003677
Pral3499g00001 220 Gene3D AP2/ERF domain 30 89 IPR036955 GO:0003700|GO:0006355
Pral3499g00001 220 MobiDBLite consensus disorder prediction 123 192 - -
Pral3499g00001 220 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 188 - -
Pral3499g00001 220 MobiDBLite consensus disorder prediction 123 163 - -
Pral3499g00001 220 ProSiteProfiles AP2/ERF domain profile. 30 87 IPR001471 GO:0003700|GO:0006355
Pral3499g00001 220 SMART rav1_2 30 93 IPR001471 GO:0003700|GO:0006355
Pral3499g00001 220 MobiDBLite consensus disorder prediction 175 189 - -
Pral3499g00001 220 MobiDBLite consensus disorder prediction 1 30 - -
Pral3499g00001 220 PRINTS Ethylene responsive element binding protein signature 31 42 IPR001471 GO:0003700|GO:0006355
Pral3499g00001 220 PRINTS Ethylene responsive element binding protein signature 53 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3499g00001 Pral-Chr3499 19950 21180 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3499g00001 1 220 AP2-EREBP Transcription Factor Family AT3G20310 59.036 5.26e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3499g00001 AP2 1.3e-15 CL0081