Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3485g00002 ATGGGAAGCCATGTGGGTTGTTGGAGTATAATAGAAGAAGAAGCTGGTTGGAGAAAGGGGCCTTGGACTGCTGAAGAAGACAGACTTCTAATAGAGTATGTCAGAATGCATGGTGAAGGAAGATGGAACTCAGTCTCAAGACTTGCAGGACTGAAAAGAAATGGAAAGAGTTGCAGATTGAGGTGGGTGAATTATCTGAGACCAGACCTCAAGAGAGGTCAGATAACACCACAAGAAGAGAGCATAATTATAGAGCTTCATGCTAGGTGGGGAAACAGATGGTCAACAATTGCAAGAAGCTTGCCAGGTAGAACAGATAATGAGATAAAGAATTATTGGAGGACTCACTTCAAGAAGAAGGCAAAAAGTCCCATTAATGTATCCGAAAAGGCAAAAAATCGCCTTTTGAGAAGGCAGCAGTTTCAACAACAACAAAAACAGCAGCAACAATTGCAATTGGACATGAAAGGTATTGTGGCCTTGCTTGAAGACAGTAACAATCATTACGAAGTGCCTTCTACCCTTTGTTCAATGGCCAACTTCTATCCAAACAACGCAGAAGAACAAGGCTGCTTCTACTCAATGATCAGTACTATTGATAATAATGACAATTCCTCTGCACCAGAAGCCTTAAATGAAGAGATTTTGTGGGACGGCCTTTGGAATTTGGATGATTTTCATGGAAACTTCAGTGCAACTAATACTACAAGCAAAGCCAATCTGCACAATCTGGTCGTTTCCTGA 744 0.414 MGSHVGCWSIIEEEAGWRKGPWTAEEDRLLIEYVRMHGEGRWNSVSRLAGLKRNGKSCRLRWVNYLRPDLKRGQITPQEESIIIELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPINVSEKAKNRLLRRQQFQQQQKQQQQLQLDMKGIVALLEDSNNHYEVPSTLCSMANFYPNNAEEQGCFYSMISTIDNNDNSSAPEALNEEILWDGLWNLDDFHGNFSATNTTSKANLHNLVVS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3485g00002 247 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Pral3485g00002 247 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Pral3485g00002 247 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Pral3485g00002 247 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Pral3485g00002 247 Pfam Myb-like DNA-binding domain 72 116 IPR001005 -
Pral3485g00002 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 66 IPR017930 -
Pral3485g00002 247 SMART sant 71 119 IPR001005 -
Pral3485g00002 247 SMART sant 18 68 IPR001005 -
Pral3485g00002 247 CDD SANT 76 117 IPR001005 -
Pral3485g00002 247 FunFam Myb transcription factor 19 71 - -
Pral3485g00002 247 Gene3D - 76 155 - -
Pral3485g00002 247 FunFam MYB transcription factor 76 155 - -
Pral3485g00002 247 Gene3D - 18 71 - -
Pral3485g00002 247 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 191 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pral3485g00002 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Pral3485g00002 247 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3485g00002 Pral-Chr3485 166632 167882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3485g00002 14 246 MYB Transcription Factor Family AT4G13480 54.023 5.18e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3485g00002 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3485g00002 K09422 - gmx:100795981 337.035