Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3461g00005 ATGGGCTCTAATAATTTGAAAGGAGCTATTCCTTCTGAAATATTCAACATTTCCACATTAACACGGCTGGAGCTTTATCAGAATTCTCTCTCAGGCCTTCTCCCACCATATTTAGGAATTAGCCTTCCCAACTTGGAGATGTTACTATTGGGTGTAAATGAACTGACCGGACAAATTCCAAATAGTATATCAAATGCTTCTAAGCTTATTACGTTGGATTTGTCATGGAATAAATTTAGCGGAGCTATACCTGAAGTACTTGAAAATTTAAAGAACTTAATGGAATTAGATTTGGATGGGAATAATTTGACTGGTTTGATTCCAAAGATGGTTAACAAATTACAAAGCCTTCAACATTTAAGTCTCAGTGATAATAGATTACAAGGATCCATTATAAATGAACTTTGCCAACTCAAACGTCTAAGTGAGTTGTATCTTGCCAATAACCTATTTTCAGGAGCGATTCCAGGATGTCTCGAGAATACTTCAGTGCGAAAGTTGAATTTTAGTTCTAATAAATTGATTTCTCATGTACCCTCTTCTATTTGGAGTCTCAAAGATATCTTGGTTTTAGACATATCCTCCAATGCACTAAGCGGGATAATTTCACCAGAGATATCAAACATGAGAGCAATTATACTACTAAATTTGTCAAGAAACCAAATTTCAGGAAGCATTCCTATAACTATGGGTATCTTGCAAACTCTGCAAAACCTATCTTTGGCTCACAACAAATTACAAGGACCTATACCTGAATCGCTTAGTGGCATGATAAGTATTGAGTCCATGGATCTTTCCCATAATTATTTATCTGGTATAATTCCAGAGTCCTTAGAGTCATTACTCTATCTTAAATTCATCAATCTTTCTTATAATTTATTGCATGGAGAAATTCCAAATGGTGGCTGTTTTCAGAATTTTACAGCTCAATCTTTTATGATGAATAAAGATCTTTGTGGAAAATCCCAACTCCAAGTGCAACCATGTAAAAAAGAAAGGAAGTACATGACAAAAAGAGTAAAGTTGTTGATAAAATGCTCACTTCCTATCATGGTTGTCATTCTGGTTGTTTCATTCATTGTCTATCTAAGACATAAGAGAGATGCGTATGCTAATGGTTCAGCCAACAAAGATTTAATAAATCTGGGAACACCAATTAGGGTATCCTATTATGATCTTTTGCACGGAACAGATGGATTTGATGAGAGTAATCTTCTTGGCTTTGGATATTATGGATCAGTATACAAAGCAACTCTTCCAAATGGAATGATAGTTGCTGTTAAAGTATTGCGCTCAAACTTGGATGAAGCACTAATGAGTTTTGATATTGAGTGTGTTGTGGCTTGCAATTTACGACACCGTAATCTTGTTAAGATTATTAGTAGCTGCTCAAATGATTATTTTAAGTGTCTAATAATGGAGTTCATGTCAAATGGGAATCTAGACAAATGGTTATACTCTCATAACAACTGTTTAGATATCCTAAAAAGGTTGAATATAATGATTGATGTGGCAGTTGCATTAGAATATCTTCATCATGGTTCTTCCACACCAATTGTCCATTGTGATCTAAAACCGAGCAATGTCTTGTTAGATGAAAATATGGTGGCTCATCTCACTGATTTTGGTGTAGCTAAATTGGTGGGTGAAGAACACTTGGAAATTTATACAAAAACTTTGGCTACAATTGGTTATATGGCACCAGAGTATGGATCAAAAGGAGCTATTTCCATTAAAGGAGATGTGTACAGCTATGGCATTTTGTTAATGGAAATATTTACGAGAAAGAAGCCAACAGATGGCATGTTTGTAGAAAGTCTAAGTTTGAAAGATTGGGTGAGCATGTCAACACCACAATCTGTCATCCATATTCTAGATGCAACTTTGCTGCACAATCAAAATATTGGTGATATATTACCACACATGTCATCAATTTTTGAGTTGGCATTAAATTGTTGCTCCAACTTACCTGAAGCACGACCTACAATGATTGATGTTGTGGTATCAATGAAAAAAAAGCAAGTTTGCATTAATACAGAATATTAG 2046 0.3485 MGSNNLKGAIPSEIFNISTLTRLELYQNSLSGLLPPYLGISLPNLEMLLLGVNELTGQIPNSISNASKLITLDLSWNKFSGAIPEVLENLKNLMELDLDGNNLTGLIPKMVNKLQSLQHLSLSDNRLQGSIINELCQLKRLSELYLANNLFSGAIPGCLENTSVRKLNFSSNKLISHVPSSIWSLKDILVLDISSNALSGIISPEISNMRAIILLNLSRNQISGSIPITMGILQTLQNLSLAHNKLQGPIPESLSGMISIESMDLSHNYLSGIIPESLESLLYLKFINLSYNLLHGEIPNGGCFQNFTAQSFMMNKDLCGKSQLQVQPCKKERKYMTKRVKLLIKCSLPIMVVILVVSFIVYLRHKRDAYANGSANKDLINLGTPIRVSYYDLLHGTDGFDESNLLGFGYYGSVYKATLPNGMIVAVKVLRSNLDEALMSFDIECVVACNLRHRNLVKIISSCSNDYFKCLIMEFMSNGNLDKWLYSHNNCLDILKRLNIMIDVAVALEYLHHGSSTPIVHCDLKPSNVLLDENMVAHLTDFGVAKLVGEEHLEIYTKTLATIGYMAPEYGSKGAISIKGDVYSYGILLMEIFTRKKPTDGMFVESLSLKDWVSMSTPQSVIHILDATLLHNQNIGDILPHMSSIFELALNCCSNLPEARPTMIDVVVSMKKKQVCINTEY 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3461g00005 681 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 82 333 - -
Pral3461g00005 681 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 476 680 - -
Pral3461g00005 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Pral3461g00005 681 ProSiteProfiles Protein kinase domain profile. 400 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3461g00005 681 Gene3D Ribonuclease Inhibitor 1 332 IPR032675 -
Pral3461g00005 681 Pfam Leucine rich repeat 235 294 IPR001611 GO:0005515
Pral3461g00005 681 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Pral3461g00005 681 Gene3D Phosphorylase Kinase; domain 1 384 475 - -
Pral3461g00005 681 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 96 671 - -
Pral3461g00005 681 SMART LRR_typ_2 42 66 IPR003591 -
Pral3461g00005 681 SMART LRR_typ_2 138 161 IPR003591 -
Pral3461g00005 681 SMART LRR_typ_2 90 113 IPR003591 -
Pral3461g00005 681 SMART LRR_typ_2 114 137 IPR003591 -
Pral3461g00005 681 SMART LRR_typ_2 257 280 IPR003591 -
Pral3461g00005 681 SUPERFAMILY Protein kinase-like (PK-like) 381 668 IPR011009 -
Pral3461g00005 681 SMART serkin_6 400 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3461g00005 681 Gene3D Transferase(Phosphotransferase) domain 1 476 679 - -
Pral3461g00005 681 Pfam Leucine Rich Repeat 68 90 IPR001611 GO:0005515
Pral3461g00005 681 SUPERFAMILY L domain-like 3 324 - -
Pral3461g00005 681 Pfam Protein kinase domain 401 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3461g00005 681 ProSitePatterns Protein kinases ATP-binding region signature. 406 428 IPR017441 GO:0005524
Pral3461g00005 681 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3461g00005 Pral-Chr3461 157419 159688 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3461g00005 4 660 Receptor kinase-like Gene Family AT3G47090 37.604 6.66e-128 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pral3461g00005 Pkinase 9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3461g00005 - K13420 pcin:129285519 960.288