Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3450g00023 ATGGAGATTTCACCCATTAGAGGGTTACCTGATCAAATGGGAATAACAATGGAGGATCCTAGTTATCTTCATGAATGGCACTTGAACGCTTATGAGGATCCAACCTTACTACCCATAACCACTTCTGCTTTTGGAGAGACCTTATTACAGCAACATTCTTACTGTAATAATATGAACTCAGACCTTAATCCCAAAATCAGTTGCATGCAAAATTCTTCCTTTAATGAAAGACCCACAAAGCAGATCAAAACCAGCAACACTTCATCATGTTGGAGTCCCAATACTCATGAGAGTCCAGATCATCAGACATCATCAGACCAGCTGCAATTTGCTTCTTCGTGTCCAAACCATCTTTCCTTTGTGAACCAGGACTACATAAATCACATGGGATTCATGGGGAAGACCGATAACAATAAGGATGAGACAATATTATTGTCTCCAGAAGTCAATGGCGCCAATAATGTTGCTGATCATGTTTTGATGTCTCAACAATCCTTGGGGAATCCGAACTATGGGTTCAAGACGACAAGCCAATTAGATCAGGCCAGGAAGATTGGGGCCATGATTCCTAATAATAGTAGAGTTTCTCAACCAGTGCAGGACCACATCATTGCTGAGAGGAAACGAAGAGAGAAGCTTAGCCAGAGGTTCATTGCTTTGTCTGCCCTTGTTCCTGGTCTTAAGAAGATGGACAAAGCTTCTGTGCTTGGAGATGCTATAAAGTACATGAAGCAACTGCAAGAGAAAGTGAGGATTCTTGAGGAAGAACAAACAAAGGCAAAAACAGTGGAATCTGTGGTGATTGTGAGGAAATCTCATTTTCTTCCTTCTGAAGCAGCAGAAAATTCTGACTCTTCTTCAGATTCTGGTGGAGCAGGATCGTCTTCCTTCGACGAGACAGTGCTCCCAGAAATCGAAGCAAGGCTCTGTGAAAGAAGCGTTCTCATAAGAATTCACTGTGAGAAAATCAAAGGAGTTCTGGAGAAAGCAATAGGTGTGATAGAAGATCTTCATTTAACAGTCACCAATAGTAGTGCCATGACTTTTGGGAGTTCTGCTCTTGATATCACAATTATTGCTCAGATGGATTCAGAATTTTGCATGACTCTGGAGGATCTTGTGGGAAACCTACGCTCAGCCTTTAAATCTTTCATGTGA 1158 0.4162 MEISPIRGLPDQMGITMEDPSYLHEWHLNAYEDPTLLPITTSAFGETLLQQHSYCNNMNSDLNPKISCMQNSSFNERPTKQIKTSNTSSCWSPNTHESPDHQTSSDQLQFASSCPNHLSFVNQDYINHMGFMGKTDNNKDETILLSPEVNGANNVADHVLMSQQSLGNPNYGFKTTSQLDQARKIGAMIPNNSRVSQPVQDHIIAERKRREKLSQRFIALSALVPGLKKMDKASVLGDAIKYMKQLQEKVRILEEEQTKAKTVESVVIVRKSHFLPSEAAENSDSSSDSGGAGSSSFDETVLPEIEARLCERSVLIRIHCEKIKGVLEKAIGVIEDLHLTVTNSSAMTFGSSALDITIIAQMDSEFCMTLEDLVGNLRSAFKSFM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3450g00023 385 Pfam Helix-loop-helix DNA-binding domain 201 247 IPR011598 GO:0046983
Pral3450g00023 385 MobiDBLite consensus disorder prediction 70 109 - -
Pral3450g00023 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 260 IPR036638 GO:0046983
Pral3450g00023 385 MobiDBLite consensus disorder prediction 278 298 - -
Pral3450g00023 385 Gene3D - 196 267 IPR036638 GO:0046983
Pral3450g00023 385 PANTHER BHLH TRANSCRIPTION FACTOR 49 382 - -
Pral3450g00023 385 CDD bHLH_AtNAI1_like 200 272 - -
Pral3450g00023 385 Coils Coil 236 263 - -
Pral3450g00023 385 SMART finulus 203 252 IPR011598 GO:0046983
Pral3450g00023 385 MobiDBLite consensus disorder prediction 278 296 - -
Pral3450g00023 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3450g00023 Pral-Chr3450 605819 610024 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3450g00023 193 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 56.995 3.71e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral3450g00023 HLH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3450g00023 - - gmx:100798018 329.717