Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3450g00017 ATGGCTTCTAGGTCTGATGTTTCTATAAAGAGAAAAGTTATGAAGCCATCGGAAGCAATTCCAAACGTGCCTACCTGCAAGGCAGCTTGGACTCCAGAAGAAGACTCAAAACTAGCTCAGGCTATTGCGCTTCATGGAGCTCAAAGGTGGAAGTTCATAGCAGCCAGAGCAGGTCTTAATAGGAGTAGCAAGAGTTGCAGGCTAAGATGGTTGAATTATCTGAGGCCTAACATTAAGAGAGGGAACATATCAGAGGAAGAAGAAGACTTGATAATTCGCCTTCATAAACTCCTCGGAAACAGGTGGTCCTTAATTGCGGGAAGATTACCAGGAAGAACAGATAATGAAATAAAAAACTACTGGAACTCTCATTTGTGCAAGAAGGTGAAGCCAAGTGATGTATTGCGCCCAGATAAAAGAGAAGATAAACAAGAAGAGATCATAATGGTGGTGGAAGAAGATAATTCAAATATTGACTCATCAAAGCTCCATTTTGATTATGTGGATGATGATGAGTTCTTTAATTTCTCCGAAGAAGAGGGCTCCCTCAATCTGGAATGGCTCAGGGAACTCCTTCAATCCAACTAG 588 0.4167 MASRSDVSIKRKVMKPSEAIPNVPTCKAAWTPEEDSKLAQAIALHGAQRWKFIAARAGLNRSSKSCRLRWLNYLRPNIKRGNISEEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVKPSDVLRPDKREDKQEEIIMVVEEDNSNIDSSKLHFDYVDDDEFFNFSEEEGSLNLEWLRELLQSN 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3450g00017 195 ProSiteProfiles Myb-like domain profile. 27 74 IPR001005 -
Pral3450g00017 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 74 IPR017930 -
Pral3450g00017 195 Gene3D - 28 79 - -
Pral3450g00017 195 Pfam Myb-like DNA-binding domain 29 74 IPR001005 -
Pral3450g00017 195 Pfam Myb-like DNA-binding domain 80 125 IPR001005 -
Pral3450g00017 195 CDD SANT 84 125 IPR001005 -
Pral3450g00017 195 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Pral3450g00017 195 FunFam Myb transcription factor 27 79 - -
Pral3450g00017 195 SUPERFAMILY Homeodomain-like 26 121 IPR009057 -
Pral3450g00017 195 SMART sant 26 76 IPR001005 -
Pral3450g00017 195 SMART sant 79 127 IPR001005 -
Pral3450g00017 195 Gene3D - 83 149 - -
Pral3450g00017 195 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 22 144 - -
Pral3450g00017 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Pral3450g00017 195 CDD SANT 29 74 IPR001005 -
Pral3450g00017 195 FunFam Transcription factor TT2 83 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3450g00017 Pral-Chr3450 559405 561565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3450g00017 27 172 MYB Transcription Factor Family AT5G52600 51.370 7.08e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral3450g00017 Myb_DNA-binding 9.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3450g00017 K09422 - qsu:112020715 223.016