LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral3450g00006	ATGGAGATATCTCTGCACAAGAGTAAAACCCATCTGCTTCCTCTTTTGTTCATAACCAAAATTTTCTTGTTTCTCACAATCAATGCTAGTGCGACCTCAATAACCTTCAATTATGAGCAATTTCGTGATGTGGATCATCAGAACTTGAACCTTCAAGGAGAAGTTTTCCAGGAAAATGGGATGCTCAACCTCACCAGGTATAAGAAAGACAGTGCCGGGAGAGTAACATACAACAACTCATTGCAACTTTGGGACAATGAGACAAGAACACTTGCAAACTTCACTACTCGTTTCACCTTCATCATCAATGTACTAAATGAATCTCGTGATGGAAAAGGAGATGGCATCACATTCTTCTTGGCAGAGCCTGGATTTCCGTTTCCATCTCCCCCGGATGGCACAGGTATTGGTCTTGTAAGTCGCGCACAGATGCAGGATCAAAATTATCTCGACGAGCATCCATTCGTAGCAGTAGAATTTGACACCTTTTCCAATACGGATGTGGGTGATCCACCCTATGATCATGTGGGAATCCTTGTAAAAACAATGCAGACTAATTATAGAACACAATGGTACACTATGAATGATGGTAGAAAGTATGATGCTGAGATTACTTACGATTCTAGCTCATTCCAGTTAAGCGTCATGTTTACAGGATACAAGGATAACGTCAAAATCAGACAAAATTATTCCCATCAGATTGATTTGAGAGACTACCTACCAGAAGAAGTTCAATTTGGAATCTCTTCAGCCACAGGATTACGGTTTGAGTTACATACACTGTGTTCATGGTCCTTTAATTCAAGTCTTGAAATGCCCGGAGTGGTGCAAAGGAGTAAAAGCAATAATAAGCGTTTGGTCATTGGAGTGAGCATCGGATCAGTTGTAGTTATTGTTGGGTTATGCATAGCTTTGTTTCTGGTATGGAGGTCAAATTGTAGGGTGAAAAGACGTGATCGCTTGGATCTTTCCCTGGACAAAGATTTTGAATGTGTTGGACCAAAGAAGTTTTCCTATAATGAACTTGTCAGAGCCACAAATAACTTCGCAGAGGAACATAAACTCGGAGAAGGAGGTTTTGGTGGGGTCTACAAAGGATTTATCAGAGATTTGAATTCTTATGTTGCAGTAAAGAAGGTTTCCCATGAATCTAGACAAGGAGTTAAGGAGTATGCTTCTGAAGTAAAGATCATCAGTCAACTGAGACACAAGAATTTGGTGCAACTCATAGGGTGGTGCCACGAGAAGAATGATTTTCTACTTATCTATGAGTTCATGCCAAATGGAAGCTTAGATTATCATCTATATCGAAGCAGAAACCTTTTGACATGGCCAGCCAGATACAATATTGCTAAAGGCTTAGCCTCAGCAGTACTATACCTTCATGAAGAGTGGGAGCGATGTGTGGTTCACAGGGACATAAAATCAAGCAACATTATGTTAGATTCGAATTTTGATACAAAGCTTGGAGATTTTGGGTTAGCGAGGCTTGTAGAACATGGAAAGGGGTCAGAAACAACAATTGTTGCAGGAACAAAAGGGTACATGGCTCCTGAATGTGCAACCATAAGCAAGGCAATAAGGGAGTCTGATATATACAGTTTTGGAATTGTTGCTCTAGAAATAGCTTGTGGGAGAAAGCCAATTGACCACTATGCTCCTAATGACCAAGTCATGATGGTGGAATGGGTATGGGAACTCTATGGCAAAGGTGAGCTTCTTGAAGCAGCCGATAAGAGGTTTGATGGAGATTTTGATGAGCAAGAACTTGAAAGGTTAATGATTCTTGGGCTATCGTGTGCTCACCCAGATTATACTATGAGGCCTACAATTAGACAAGCACTTCAGGTACTTAACTTTGAAGCTTCACTGCCTACTCTCCCACCAACAATGCCTAAAGCAACATATGTTGCTCCATGTTTTTCTGATATTGGTTCTTCAATTTATTCATCTGCATATGCTAGTTCTTCTGCAACCAATGACCCAAGGCCTTCAACCAATAGTAGGTCATATACCAGGTCCTCACAATATTCATCCAATTCAGGGCACTCGTCTACAAAGGGACAATTCTGA	2073	0.4081	MEISLHKSKTHLLPLLFITKIFLFLTINASATSITFNYEQFRDVDHQNLNLQGEVFQENGMLNLTRYKKDSAGRVTYNNSLQLWDNETRTLANFTTRFTFIINVLNESRDGKGDGITFFLAEPGFPFPSPPDGTGIGLVSRAQMQDQNYLDEHPFVAVEFDTFSNTDVGDPPYDHVGILVKTMQTNYRTQWYTMNDGRKYDAEITYDSSSFQLSVMFTGYKDNVKIRQNYSHQIDLRDYLPEEVQFGISSATGLRFELHTLCSWSFNSSLEMPGVVQRSKSNNKRLVIGVSIGSVVVIVGLCIALFLVWRSNCRVKRRDRLDLSLDKDFECVGPKKFSYNELVRATNNFAEEHKLGEGGFGGVYKGFIRDLNSYVAVKKVSHESRQGVKEYASEVKIISQLRHKNLVQLIGWCHEKNDFLLIYEFMPNGSLDYHLYRSRNLLTWPARYNIAKGLASAVLYLHEEWERCVVHRDIKSSNIMLDSNFDTKLGDFGLARLVEHGKGSETTIVAGTKGYMAPECATISKAIRESDIYSFGIVALEIACGRKPIDHYAPNDQVMMVEWVWELYGKGELLEAADKRFDGDFDEQELERLMILGLSCAHPDYTMRPTIRQALQVLNFEASLPTLPPTMPKATYVAPCFSDIGSSIYSSAYASSSATNDPRPSTNSRSYTRSSQYSSNSGHSSTKGQF	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral3450g00006	690	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	273	IPR013320	-
	Pral3450g00006	690	PANTHER	-	56	628	-	-
	Pral3450g00006	690	SMART	serkin_6	349	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3450g00006	690	ProSitePatterns	Protein kinases ATP-binding region signature.	355	379	IPR017441	GO:0005524
	Pral3450g00006	690	FunFam	Lectin-domain containing receptor kinase A4.3	426	638	-	-
	Pral3450g00006	690	ProSiteProfiles	Protein kinase domain profile.	349	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3450g00006	690	CDD	lectin_legume_LecRK_Arcelin_ConA	36	270	IPR001220	GO:0030246
	Pral3450g00006	690	Gene3D	Phosphorylase Kinase; domain 1	334	425	-	-
	Pral3450g00006	690	ProSitePatterns	Legume lectins beta-chain signature.	156	162	IPR019825	-
	Pral3450g00006	690	Gene3D	Transferase(Phosphotransferase) domain 1	426	639	-	-
	Pral3450g00006	690	Pfam	Protein kinase domain	350	616	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral3450g00006	690	Pfam	Legume lectin domain	34	272	IPR001220	GO:0030246
	Pral3450g00006	690	FunFam	L-type lectin-domain containing receptor kinase IX.1	334	425	-	-
	Pral3450g00006	690	CDD	STKc_IRAK	355	619	-	-
	Pral3450g00006	690	Gene3D	-	32	281	-	-
	Pral3450g00006	690	MobiDBLite	consensus disorder prediction	654	690	-	-
	Pral3450g00006	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	469	481	IPR008271	GO:0004672\|GO:0006468
	Pral3450g00006	690	SUPERFAMILY	Protein kinase-like (PK-like)	333	638	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral3450g00006	Pral-Chr3450	115717	120734	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral3450g00006	21	636	Receptor kinase-like Gene Family	AT5G10530	44.567	1.58e-170	501

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pral3450g00006		Pkinase	3.5e-51	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral3450g00006	-		-	cam:101491058	693.345