Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3450g00001 ATGCCTCTCCTTGAAAGCTCAGACACAGCATACTTCCTAGCCAAATCAGATCGGATGTTGCGAATATCAACTTTCTTCCTCCTGATATCCCATGCCTTTTCCATGAACTTCAGCTTCACCAGTTTCCAGCCCAATGATTATAGCATGATATCGTGGGAATTATCAGCTTACATTGCAGAGTCACACCTCTACTTAGTAAGAAACCAAAAGGAGCTATCCTCAGACAATAGTCAAGGTCGAGCCACATATCAAGGACCGATGCCCTTGTGGGACAAAGCCACCGGGAAACTCGATGGCTGGCTAATATCACAGGAGGCAGATCAAATCAGGCTTTCATCAGCTACAATTTTCGGTTTCTCAGCAGCCACAGGAACATCAGTTGTAGTACATAAGGTCGATACATGGAGTTTCTACTCAGAGGACTTCCCACGTATTGCTCCCAGTACAGGTAGAAATGCCACAGCACTTGCTATAGGATTAGGGGTTGGAGGGTTTGTTTTAGTTTGTCTGGTTGTATTGTTTTTCTTGTGGAAGTACAAAAAGAAAATAGAAGATGGTGAGTCTAATGACGACATCAGTCACGATGATTTTGAAGCAGGAACAGGGCCCAAAAAGTACTCTTATGCCGAATTGGCAAGTGCCGTAGATAATTTCAAAGATGAGCAAAAGCTTGGTCAGGGAGGATTTGGAGGGGTCTATAGAGGTTTTCTCAAAGATTCAAACTCCTATGTTGCCATAAAGAGAATTTCAAAGGATTCTAAACAGGGGAAGAAGGAGTTTGCTTCAGAAGTAAGAACTACTAGTCAACTAAGGCATCGAAACTTGGTGCAACTAATCGGTTGTTGTCATGAAAGGAAAGAGATGTTGCTAGTTTACGAGTACATGCCAAATGGAAGTTTAGCTTCTCATCTCTTTGATGACAAAAGGTTTCTCACATGGTCAATTAGATTTAAAATTGCTCAAGGCTTCCCCTCTGCCTTATTATACCTGCATGAAGAATGGGAACAATGTGTGGTTCATAGGGACATAAAATCGAGCAACATCACGCTAGACTCCAACTTCAATGCAAAACTTGGAGATTTCGGATTGGCACGACTTGTAGACCATGCAAAAGGAGCACAAACTACAGCTTTAGCAGGAACTATGGGTTACATGGCTCCTGAATGTATCACTACTGGAAGGGCCAGTAAAGAATCTGATTTATATAGTCTTGGAGTTGTTGCTCTAGAGTTAGTTTGTGGAAGAAAACCTCTCAACCATAGGGTTCCAGAAGATGAAATAAACATAGTGAATTGGGCGTGGGATCTCTATGGAAGCGGGAGAATTCTTGAAGCAGTTGATCCAAGGCTACAAGGAGATTTTGACCACAATCAAGTGGAACGCCTGATGATCGTTGGGCTGTGGTGTGCTCATCCTGATCATAACCATAGACCTTCAATAAGGCAAGCAATTCATGTGCTTAACTTTGAAACTCCATTTCCTAGTCTTCCTTCAAGCTAG 1500 0.4247 MPLLESSDTAYFLAKSDRMLRISTFFLLISHAFSMNFSFTSFQPNDYSMISWELSAYIAESHLYLVRNQKELSSDNSQGRATYQGPMPLWDKATGKLDGWLISQEADQIRLSSATIFGFSAATGTSVVVHKVDTWSFYSEDFPRIAPSTGRNATALAIGLGVGGFVLVCLVVLFFLWKYKKKIEDGESNDDISHDDFEAGTGPKKYSYAELASAVDNFKDEQKLGQGGFGGVYRGFLKDSNSYVAIKRISKDSKQGKKEFASEVRTTSQLRHRNLVQLIGCCHERKEMLLVYEYMPNGSLASHLFDDKRFLTWSIRFKIAQGFPSALLYLHEEWEQCVVHRDIKSSNITLDSNFNAKLGDFGLARLVDHAKGAQTTALAGTMGYMAPECITTGRASKESDLYSLGVVALELVCGRKPLNHRVPEDEINIVNWAWDLYGSGRILEAVDPRLQGDFDHNQVERLMIVGLWCAHPDHNHRPSIRQAIHVLNFETPFPSLPSS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3450g00001 499 SUPERFAMILY Protein kinase-like (PK-like) 202 489 IPR011009 -
Pral3450g00001 499 ProSitePatterns Serine/Threonine protein kinases active-site signature. 338 350 IPR008271 GO:0004672|GO:0006468
Pral3450g00001 499 SMART serkin_6 218 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3450g00001 499 Gene3D Transferase(Phosphotransferase) domain 1 295 497 - -
Pral3450g00001 499 SUPERFAMILY Concanavalin A-like lectins/glucanases 113 241 IPR013320 -
Pral3450g00001 499 CDD STKc_IRAK 224 488 - -
Pral3450g00001 499 FunFam L-type lectin-domain containing receptor kinase IX.1 203 294 - -
Pral3450g00001 499 Gene3D Phosphorylase Kinase; domain 1 203 294 - -
Pral3450g00001 499 SUPERFAMILY Concanavalin A-like lectins/glucanases 25 99 IPR013320 -
Pral3450g00001 499 ProSitePatterns Protein kinases ATP-binding region signature. 224 247 IPR017441 GO:0005524
Pral3450g00001 499 Gene3D - 33 106 - -
Pral3450g00001 499 Pfam Protein kinase domain 218 485 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3450g00001 499 PANTHER - 108 488 - -
Pral3450g00001 499 ProSiteProfiles Protein kinase domain profile. 218 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3450g00001 499 FunFam Lectin-domain containing receptor kinase A4.3 295 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3450g00001 Pral-Chr3450 26063 27678 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3450g00001 111 498 Receptor kinase-like Gene Family AT5G10530 55.808 7.43e-149 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Pral3450g00001 Pkinase 3.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3450g00001 - - pcin:129286332 582.408