Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3443g00012 ATGTTAAGTAGTGGCAAATTTCGTGGCATCTTTGTTGCTGTACAAGCCAATTCTCCACCATCATTAATCCCATATGCTGCATTGAGAATTTGTCATTATGAGACAGAAGGGGGTCAAAATGCTGTCGATAAAAATTTGAAATTGTCACGAACCATCATGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAGATCATTGTCACCTTATGAAGCTGCCGCTAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTGGCTTATGCAAATCGTCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGTTAAATCATTTGGAGAACAAAGGTGTAATCAAGCCGGCTGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAATCATTTTAAGCAAATTCATGAACGTGAACACACAAAAAGATTGAACACAATAGAGTCAGCAAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAGGTATTCAATGAAAATGGAGAAGTATAAGAGTGCGGCAAGGAGCATTTTGACTCCCAAAATGGGTTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGCCATATGATAGATATGATGGATAATAAGAAGTTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGTTGACGTATTAAAAGAGGCAAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGACCTTGAAGAGGACCGCTGATGCTGCCTTTTCTTGGGAGGAAATCCTGATGGGGAAGGCAAAGAAGGAGGCTGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAATAAATACTGTCCGGATAGTATGGTTACTGAGGCTACTGAGGATGAAGATGCTGGTGAGACCTGTGATGAAGCTGATGGTGCCTATATCAATAAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGATTTCATAAATAAGCAATCAGGAAAATAA 1152 0.3984 MLSSGKFRGIFVAVQANSPPSLIPYAALRICHYETEGGQNAVDKNLKLSRTIMQSRVGIFWDLDNKPPRSLSPYEAAAKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKGVIKPAEPYLCRVCGRKFYTNEKLINHFKQIHEREHTKRLNTIESAKGNRRVKLVARYSMKMEKYKSAARSILTPKMGYGLADEIKHAGFWVRTVLDKPQAADIALKGHMIDMMDNKKFECVVLVSDDSDFVDVLKEAKLRCLKTVVVGDTNDGTLKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKNKYCPDSMVTEATEDEDAGETCDEADGAYINKEDSNAWWELDTDDDFINKQSGK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3443g00012 383 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 54 378 - -
Pral3443g00012 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 134 162 IPR013087 -
Pral3443g00012 383 ProSitePatterns Zinc finger C2H2 type domain signature. 136 157 IPR013087 -
Pral3443g00012 383 Gene3D Classic Zinc Finger 134 160 - -
Pral3443g00012 383 Coils Coil 380 383 - -
Pral3443g00012 383 SUPERFAMILY beta-beta-alpha zinc fingers 131 160 IPR036236 -
Pral3443g00012 383 Pfam NYN domain 207 286 IPR021139 GO:0004540
Pral3443g00012 383 CDD PIN_LabA-like 144 275 - -
Pral3443g00012 383 Gene3D - 49 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3443g00012 Pral-Chr3443 274929 277560 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3443g00012 56 374 C2H2 Transcription Factor Family AT4G12240 63.323 2.06e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3443g00012 NYN 9.5e-08 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3443g00012 - - lja:Lj3g3v3326020.1 499.204