Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3443g00008 ATGTTTTTGGGTTCTGCGAAATTTTTGAGCATCCTAGAAGCATTTGTGAGCTCGCTTTTGCGTTGGAGGTACGGTGGCAGTCATTATTTTTCATTCAGAAAAGACAGCCAATTGCCTATGTTAAGTAGTGGCAAATTTCGTGGCATCTTTGTTGCTGTACAAGCCAATTCTCCACCATCATTAATCCCATATGCTGCATTGAGAATTTGTCATTATGAGACAGAAGGGGGTCAAAATGCTGTCGATAAAAATTTGAAATTGTCACGAACCATCATGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAGATCATTGTCACCTTATGAAGCTGCCGCTAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTGGCTTATGCAAATCGTCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGTTAAATCATTTGGAGAACAAAGGTGTAATCAAGCCGGCTGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAATCATTTTAAGCAAATTCATGAACGTGAACACACAAAAAGATTGAACACAATAGAGTCAGCAAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAGGTATTCAATGAAAATGGAGAAGTATAAGAGTGCGGCAAGGAGCATTTTGACTCCCAAAATGGGTTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGCCATATGATAGATATGATGGATAATAAGAAGTTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGTTGACGTATTAAAAGAGGCAAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGACCTTGAAGAGGACCGCTGATGCTGCCTTTTCTTGGGAGGAAATCCTGATGGGGAAGGCAAAGAAGGAGGCTGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAATAAATACTGTCCGGATAGTATGGTTACTGAGGCTACTGAGGATGAAGATGCTGGTGAGACCTGTGATGAAGCTGATGGTGCCTATATCAATAAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGATTTCATAAATAAGCAATCAGGAAAATAA 1269 0.4003 MFLGSAKFLSILEAFVSSLLRWRYGGSHYFSFRKDSQLPMLSSGKFRGIFVAVQANSPPSLIPYAALRICHYETEGGQNAVDKNLKLSRTIMQSRVGIFWDLDNKPPRSLSPYEAAAKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKGVIKPAEPYLCRVCGRKFYTNEKLINHFKQIHEREHTKRLNTIESAKGNRRVKLVARYSMKMEKYKSAARSILTPKMGYGLADEIKHAGFWVRTVLDKPQAADIALKGHMIDMMDNKKFECVVLVSDDSDFVDVLKEAKLRCLKTVVVGDTNDGTLKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKNKYCPDSMVTEATEDEDAGETCDEADGAYINKEDSNAWWELDTDDDFINKQSGK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3443g00008 422 ProSitePatterns Zinc finger C2H2 type domain signature. 175 196 IPR013087 -
Pral3443g00008 422 Gene3D - 88 334 - -
Pral3443g00008 422 SUPERFAMILY beta-beta-alpha zinc fingers 170 199 IPR036236 -
Pral3443g00008 422 CDD PIN_LabA-like 183 314 - -
Pral3443g00008 422 Gene3D Classic Zinc Finger 173 199 - -
Pral3443g00008 422 Pfam NYN domain 246 325 IPR021139 GO:0004540
Pral3443g00008 422 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 93 417 - -
Pral3443g00008 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 201 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3443g00008 Pral-Chr3443 274929 278735 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3443g00008 95 413 C2H2 Transcription Factor Family AT4G12240 63.323 8.98e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3443g00008 NYN 1.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3443g00008 - - lja:Lj3g3v3326020.1 504.597