Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3443g00006 ATGCCCACCGGTGCAAGTCCCTGCAACACATCTCAAACAAAGAGCATCCTAGAAGCATTTGTGAGCTCGCTTTTGCGTTGGAGTCATTATTTTTCATTCAGAAAAGACAGCCAATTGCCTATGTTAAGTAGTGGCAAATTTCGTGGCATCTTTGTTGCTGTACAAGCCAATTCTCCACCATCATTAATCCCATATGCTGCATTGAGAATTTGTCATTATGAGACAGAAGGGGGTCAAAATGCTGTCGATAAAAATTTGAAATTGTCACGAACCATCATGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAGATCATTGTCACCTTATGAAGCTGCCGCTAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTGGCTTATGCAAATCGTCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGTTAAATCATTTGGAGAACAAAGGTGTAATCAAGCCGGCTGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAATCATTTTAAGCAAATTCATGAACGTGAACACACAAAAAGATTGAACACAATAGAGTCAGCAAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAGGTATTCAATGAAAATGGAGAAGTATAAGAGTGCGGCAAGGAGCATTTTGACTCCCAAAATGGGTTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGCCATATGATAGATATGATGGATAATAAGAAGTTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGTTGACGTATTAAAAGAGGCAAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGACCTTGAAGAGGACCGCTGATGCTGCCTTTTCTTGGGAGGAAATCCTGATGGGGAAGGCAAAGAAGGAGGCTGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAATAAATACTGTCCGGATAGTATGGTTACTGAGGCTACTGAGGATGAAGATGCTGGTGAGACCTGTGATGAAGCTGATGGTGCCTATATCAATAAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGATTTCATAAATAAGCAATCAGGAAAATAA 1272 0.4033 MPTGASPCNTSQTKSILEAFVSSLLRWSHYFSFRKDSQLPMLSSGKFRGIFVAVQANSPPSLIPYAALRICHYETEGGQNAVDKNLKLSRTIMQSRVGIFWDLDNKPPRSLSPYEAAAKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKGVIKPAEPYLCRVCGRKFYTNEKLINHFKQIHEREHTKRLNTIESAKGNRRVKLVARYSMKMEKYKSAARSILTPKMGYGLADEIKHAGFWVRTVLDKPQAADIALKGHMIDMMDNKKFECVVLVSDDSDFVDVLKEAKLRCLKTVVVGDTNDGTLKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKNKYCPDSMVTEATEDEDAGETCDEADGAYINKEDSNAWWELDTDDDFINKQSGK 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3443g00006 423 Gene3D Classic Zinc Finger 174 200 - -
Pral3443g00006 423 ProSitePatterns Zinc finger C2H2 type domain signature. 176 197 IPR013087 -
Pral3443g00006 423 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 94 418 - -
Pral3443g00006 423 Gene3D - 89 335 - -
Pral3443g00006 423 ProSiteProfiles Zinc finger C2H2 type domain profile. 174 202 IPR013087 -
Pral3443g00006 423 Pfam NYN domain 247 326 IPR021139 GO:0004540
Pral3443g00006 423 SUPERFAMILY beta-beta-alpha zinc fingers 171 200 IPR036236 -
Pral3443g00006 423 CDD PIN_LabA-like 184 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3443g00006 Pral-Chr3443 274929 278735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3443g00006 96 414 C2H2 Transcription Factor Family AT4G12240 63.323 4.68e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3443g00006 NYN 1.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3443g00006 - - lja:Lj3g3v3326020.1 504.597