Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3443g00005 ATGCCCACCGGTGCAAGTCCCTGCAACACATCTCAAACAAAGAGCATCCTAGAAGCATTTGTGAGCTCGCTTTTGCGTTGGAGGTACGGTGGCAGTCATTATTTTTCATTCAGAAAAGACAGCCAATTGCCTATGTTAAGTAGTGGCAAATTTCGTGGCATCTTTGTTGCTGTACAAGCCAATTCTCCACCATCATTAATCCCATATGCTGCATTGAGAATTTGTCATTATGAGACAGAAGGGGGTCAAAATGCTGTCGATAAAAATTTGAAATTGTCACGAACCATCATGCAAAGCAGAGTTGGAATTTTTTGGGATTTAGACAACAAACCACCCAGATCATTGTCACCTTATGAAGCTGCCGCTAAGCTGAAAGCAGCTGCATCTCACTTTGGTGTTGTTAAGCATATGGTGGCTTATGCAAATCGTCATACTTTTAGCCATGTCCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGTTAAATCATTTGGAGAACAAAGGTGTAATCAAGCCGGCTGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAATCATTTTAAGCAAATTCATGAACGTGAACACACAAAAAGATTGAACACAATAGAGTCAGCAAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAGGTATTCAATGAAAATGGAGAAGTATAAGAGTGCGGCAAGGAGCATTTTGACTCCCAAAATGGGTTATGGTTTGGCAGATGAGATAAAACATGCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCTGCAGATATTGCATTGAAAGGCCATATGATAGATATGATGGATAATAAGAAGTTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGTTGACGTATTAAAAGAGGCAAAGTTACGATGTCTCAAGACAGTTGTCGTTGGGGATACTAATGATGGGACCTTGAAGAGGACCGCTGATGCTGCCTTTTCTTGGGAGGAAATCCTGATGGGGAAGGCAAAGAAGGAGGCTGTATCAGTTGTTGAAAAGTGGAAGGATCGTGATATTTTGAAAAGATTAGAGTGGACATACAATCCAGAGGTGGAGAAAAATAAATACTGTCCGGATAGTATGGTTACTGAGGCTACTGAGGATGAAGATGCTGGTGAGACCTGTGATGAAGCTGATGGTGCCTATATCAATAAGGAAGACTCAAATGCTTGGTGGGAATTGGATACTGATGATGATTTCATAAATAAGCAATCAGGAAAATAA 1284 0.4058 MPTGASPCNTSQTKSILEAFVSSLLRWRYGGSHYFSFRKDSQLPMLSSGKFRGIFVAVQANSPPSLIPYAALRICHYETEGGQNAVDKNLKLSRTIMQSRVGIFWDLDNKPPRSLSPYEAAAKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLLNHLENKGVIKPAEPYLCRVCGRKFYTNEKLINHFKQIHEREHTKRLNTIESAKGNRRVKLVARYSMKMEKYKSAARSILTPKMGYGLADEIKHAGFWVRTVLDKPQAADIALKGHMIDMMDNKKFECVVLVSDDSDFVDVLKEAKLRCLKTVVVGDTNDGTLKRTADAAFSWEEILMGKAKKEAVSVVEKWKDRDILKRLEWTYNPEVEKNKYCPDSMVTEATEDEDAGETCDEADGAYINKEDSNAWWELDTDDDFINKQSGK 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3443g00005 427 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 98 422 - -
Pral3443g00005 427 Gene3D - 93 339 - -
Pral3443g00005 427 Pfam NYN domain 251 330 IPR021139 GO:0004540
Pral3443g00005 427 SUPERFAMILY beta-beta-alpha zinc fingers 175 204 IPR036236 -
Pral3443g00005 427 CDD PIN_LabA-like 188 319 - -
Pral3443g00005 427 Gene3D Classic Zinc Finger 178 204 - -
Pral3443g00005 427 ProSitePatterns Zinc finger C2H2 type domain signature. 180 201 IPR013087 -
Pral3443g00005 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 178 206 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3443g00005 Pral-Chr3443 274929 278735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3443g00005 100 418 C2H2 Transcription Factor Family AT4G12240 63.323 8.65e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral3443g00005 NYN 1.2e-07 CL0280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3443g00005 - - lja:Lj3g3v3326020.1 504.597