Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3421g00020 ATGTACAAGATTGGAGTTTTAAGTTACAAGAGGTTGTTGGAGGTTGGAGATTTAGGAGTGACCGAAGGGAGTACTCTGAGGGTATTTTCATACAGTGAGCTGAAGAAAGCCACACACGGTTTCAAACAACAGCTGGGTAAGGGTTCCTTCGGATCAGTTTACAGAGGAACTTTACACAAAGGAAGAAAATTGATTGCTGTGAAAATGCTACACAAGTCAATCGATGAAGGAGAGAGAGAATTTGAAGCTGAAATGCAAGCCATTGGGAAAACACACCACAAAAACTTAGTTCGCTTGCTGGGATATTGTGCTGAGAGATCTAAAAGGCTTCTGGTTTATGAGTACATGAGCAATGGCTCCCTTGAGAAGCTTATCTTTGGTGACAGTACTATGCGTCCAGATTGGGATCAGAGAAGAAGAATAGCACTAGACATTGCAAGAGGGTTGCTATATCTGCATGAAGAATGCAGGGCTCCCATCATTCACTGTGACATAAAGCCTCAAAACATATTGATGGATGAGCTTTTCACAGCTAAAATATCAGACTTTGGGTTGGCCAAACTTCTAATGCCGGATCAAACAAGAACCTTCACTCAAGTTAGGGGCACGAGAGGCTATTTGGCTCCAGAGTGGAATAAGAACACTCCAATAACAGTGAAAGCAGATGTTTATAGCTATGGAATAATGCTTTTGGAGATTGTATTTTGCAGAAGAAGCCTGGTGGTTAATATGTTGAATCCAGAGCAAATTGTTCTGTCCAACTGGGTGTACAAGTGCTTTGCGCGACGAGAGCTAAACAAGCTGGTTGTTGGGGAAGAAGTGGATAATAGTTTAATGGAGAATATGGTGAAAGTGGGGTTATGGTGTATTCAAGATGAACCTTTTCTTCGGCCATCAATGAAGAGTGTGGTGTTGATGCTTGAGGGAGTTACGGAAGTGGCTATTCCTCCTTCTCCATCTTCTGATTCTATTTGCTAG 978 0.4213 MYKIGVLSYKRLLEVGDLGVTEGSTLRVFSYSELKKATHGFKQQLGKGSFGSVYRGTLHKGRKLIAVKMLHKSIDEGEREFEAEMQAIGKTHHKNLVRLLGYCAERSKRLLVYEYMSNGSLEKLIFGDSTMRPDWDQRRRIALDIARGLLYLHEECRAPIIHCDIKPQNILMDELFTAKISDFGLAKLLMPDQTRTFTQVRGTRGYLAPEWNKNTPITVKADVYSYGIMLLEIVFCRRSLVVNMLNPEQIVLSNWVYKCFARRELNKLVVGEEVDNSLMENMVKVGLWCIQDEPFLRPSMKSVVLMLEGVTEVAIPPSPSSDSIC 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3421g00020 325 PIRSF ILK 25 315 - -
Pral3421g00020 325 Gene3D Phosphorylase Kinase; domain 1 17 115 - -
Pral3421g00020 325 CDD STKc_IRAK 45 309 - -
Pral3421g00020 325 Pfam Protein kinase domain 42 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3421g00020 325 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Pral3421g00020 325 SUPERFAMILY Protein kinase-like (PK-like) 24 308 IPR011009 -
Pral3421g00020 325 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Pral3421g00020 325 SMART serkin_6 39 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3421g00020 325 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 20 319 - -
Pral3421g00020 325 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 116 315 - -
Pral3421g00020 325 Gene3D Transferase(Phosphotransferase) domain 1 116 314 - -
Pral3421g00020 325 FunFam S-receptor-like serine/threonine-protein kinase 13 115 - -
Pral3421g00020 325 ProSiteProfiles Protein kinase domain profile. 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3421g00020 Pral-Chr3421 318081 319202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3421g00020 29 317 Receptor kinase-like Gene Family AT5G20050 42.071 1.23e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Pral3421g00020 Pkinase 2.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3421g00020 - - pcin:129309635 560.836