Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3421g00005 ATGTCGAGCAGCAACGTGGACGTTGGTTCTGAGCAACTATGCTATATCCCCTGCAAATTTTGCAACATTGTTCTTGCGGTTAGTGTTCCGTGCAGCAATCTTTGTGACATCGTGACCGTCCGATGTGGTCACTGCTCCAATCTATGGTCCGTGAACATGGCAGCCGCATTTCAGTCACTGTCATGGCAAGAAGTTCAGGCTTCTGGGTTATCCAATCCAGAGTATAGAATCGAGACTGGTTCGTCTTCCAGAAGCAACAATAGGGTTCCCATGCGAACCCCTACCACACGTATTGCAACTGAGGCTGTGACCCCTAGGCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCGTACAATCAGTTCATAAAAGAAGAGATTCAGAGGATCAAAGTCAATAACCCAGATATCAGTCACAGGGAAGCATTCAGCACTGCTGCGAAGAATTGGGCACATTTCCCTCACATTCATTTCGGGTTGATGCTGGAGGCCAATAATCAGGCTAGGATTGGGAATTGA 516 0.4864 MSSSNVDVGSEQLCYIPCKFCNIVLAVSVPCSNLCDIVTVRCGHCSNLWSVNMAAAFQSLSWQEVQASGLSNPEYRIETGSSSRSNNRVPMRTPTTRIATEAVTPRPPEKRQRVPSAYNQFIKEEIQRIKVNNPDISHREAFSTAAKNWAHFPHIHFGLMLEANNQARIGN 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3421g00005 171 CDD HMG-box_SF 113 149 - -
Pral3421g00005 171 Gene3D High mobility group box domain 104 155 IPR036910 -
Pral3421g00005 171 Pfam YABBY protein 10 159 IPR006780 GO:0007275
Pral3421g00005 171 FunFam axial regulator YABBY 5-like 97 155 - -
Pral3421g00005 171 PANTHER PROTEIN YABBY 6-RELATED 1 167 IPR006780 GO:0007275
Pral3421g00005 171 SUPERFAMILY HMG-box 103 152 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3421g00005 Pral-Chr3421 35668 39773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3421g00005 4 170 C2C2-YABBY Transcription Factor Family AT2G26580 71.856 3.71e-87 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Pral3421g00005 YABBY 1.1e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3421g00005 K25796 - gmx:100499942 296.204