Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3402g00005 ATGGTGAGAGGGAAGACACAGATGAAGCGTATAGAGAACGCGACGAGCAGGCAAGTGACATTCTCAAAGAGACGTAATGGACTTTTAAAGAAAGCTTTTGAGCTCTCAGTTCTGTGTGATGCTGACGTTGCTCTCATAATCTTCTCCCCAAGAGGCAAGTTGTATGAATTTGCAAGCTCTAGCATGCAGGCAACAGTTGAACGTTATCGCTGTCATAATAGAGATGCTCAAACAGCCACCAGATTTGTAGAACAAAATATGCAGCATCTAAAGCAAGAAACTGCAACTATGATGAAGAAGATTGAGCAGCTTGAAATTGCAAAACGGAAGCTCTTGGGAGAAAATTTTGGCTCATGCTCCGTAAAAGAACTAGAAGAGATAGAACAGCAGCTGGAAAGGAGTGCAAGAAAAGTTCGTGAGAGGAAGATTCAAGTTTATAACGAACAAATGGAGCAACTACAAGAAAAGGGAAAAACATTAGCAGCAGAAAATGCAAGGCTCTCTGACAAGTATCATAGCTTGGCAAAGCAAGCAAGAGGGAAGAATCATTGTGAAAATCCAGCCTCCTTAGAAAATAGTCCAACTTCAGAAGTAGAAACTAACTTGTTCATTGGATTACCAGAAACAAGAGGCATAACTCTTCCTCCTCATGTGGTTTGA 660 0.4121 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDADVALIIFSPRGKLYEFASSSMQATVERYRCHNRDAQTATRFVEQNMQHLKQETATMMKKIEQLEIAKRKLLGENFGSCSVKELEEIEQQLERSARKVRERKIQVYNEQMEQLQEKGKTLAAENARLSDKYHSLAKQARGKNHCENPASLENSPTSEVETNLFIGLPETRGITLPPHVV 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3402g00005 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3402g00005 219 Coils Coil 73 110 - -
Pral3402g00005 219 FunFam MADS-box protein SOC1 14 95 - -
Pral3402g00005 219 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pral3402g00005 219 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Pral3402g00005 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Pral3402g00005 219 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3402g00005 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 Coils Coil 121 170 - -
Pral3402g00005 219 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral3402g00005 219 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3402g00005 Pral-Chr3402 161514 182839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3402g00005 1 158 MADS-box Gene Family AT2G45660 71.519 3.92e-79 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3402g00005 K-box 8.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3402g00005 - - mnt:21403655 284.648