Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3402g00004 ATGGTGAGAGGGAAGATAGAGATGAAGCGCATAGAGAACGCGACGAACAGACAAGTAACATTCTCAAAGAGGCGTAATGGACTCTTAAAGAAGGCTTTTGAGCTCTCAGTTCTGTGTGAAGTTGAGGTTGCTCTCATCATCTTCTCTCCCAGAGGCAAACTGTGTGAATTTTCAAGCTCCAGCTTGAAGGAGACTATTGAGCGTTACCACAAACATGTTAAAGATTCTCATTTCTTCCAACAAAATATGCAGCGTCTGAATCAAGAAACAGCAAGTATGAAGAAGAAGATTGAGCTTCTTGAAGCTTCAAAACGGAAACTAATAGGAGAAGGTTTGAACACATGTTCCTTACAAGAACTGGAAGAGATTGAACAACAGGTGCGAAAGAGTGTCAGAAACGTCCGAGCAAGAAAGAATCATATATTTAAGGAGAAAATGGAGAAACTACAAGAAAAGGAAAAACTCCTAACAGCAGAAAATGCAAGGCTTTCTGAGAAGTGTGGTATGCAGGCACATGTGGAGACTGATTTGGTCATCGGACTTCCAGAAACAGAATCATGA 561 0.41 MVRGKIEMKRIENATNRQVTFSKRRNGLLKKAFELSVLCEVEVALIIFSPRGKLCEFSSSSLKETIERYHKHVKDSHFFQQNMQRLNQETASMKKKIELLEASKRKLIGEGLNTCSLQELEEIEQQVRKSVRNVRARKNHIFKEKMEKLQEKEKLLTAENARLSEKCGMQAHVETDLVIGLPETES 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3402g00004 186 Coils Coil 117 137 - -
Pral3402g00004 186 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Pral3402g00004 186 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Pral3402g00004 186 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Pral3402g00004 186 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Pral3402g00004 186 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 Coils Coil 139 166 - -
Pral3402g00004 186 Coils Coil 83 103 - -
Pral3402g00004 186 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral3402g00004 186 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
Pral3402g00004 186 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral3402g00004 186 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3402g00004 Pral-Chr3402 110645 120444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3402g00004 1 154 MADS-box Gene Family AT2G45660 65.190 5.48e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral3402g00004 K-box 4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3402g00004 - - jcu:105643075 238.81