Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3400g00001 ATGGAGAAAGAATTGATTCAACTGTTTGGAGCAGTGAAGAAGGCGGCAGACGCAGCGGCGGCTTCAACCGCCTGCGAGGTCGAAGAAAGCCAATGCCTTGATGCGTTCAAGATGCCCAAGAAATTTCCTGTCAATTATGAAATTCTAGTAGCAACTCAGGTAGGTAAACATCTAAGAGTTCTAACAAAGCATCCCAGAAAGAAGATCCAGACCTTCGCTATGGACATAGTAGAGATATGGAAAGCCATAATCATCAAGGGAATAAGCCCAAAAAAGAAAGTAAACGTTGAGAAAACTCATTGGAATGGGACATCAAACTCCGGAAAAGGAAATACCAAGGATTCTACGATGGAGAAAGAATTGATCCAACTATATGAAGCAGTGACGAAGGCGGCAAACGCGGCAGCGACCTCAGCCACCGGCGAAGTCGAAGAAAATCGATGCCTTGATGTGTTGAAGCTGCTCAAGAAATTTCCCGTCAATTATCAAATTCTGACGTCAACCCAAGTTCTAAAGCCTGAGAAAACTGATGGGAATGGAACACCAAGCTCCGAACAAGCAGATTCTAACGGCACTGTTTCTGCAGAAAATGTTGAAGTTGAGAAGGTTGGGAAGACTCGTGTGAAAAGGCTTAAACTTAAGAAGACTGTCGTGGACATTGCCAAGGCTGAGAAAACTGATAGGAATATTGAGCCATCAACCTCCGAAAATGTAAAGGAAAAAGATTGCAATGTGGTTACAAGCGAGAAAACTGTTTCTGTCGCAAACATAGCCAAGAATGAGGAGAAGCAAGTTTCTGGAATCCTAAAGAAGGGATCCTCATCAAGCCCTGATTCTCCTTTAAAGCAGGAAAATATGATTAAAACTAACGATGAAAAGCGAGACAAAATGAGGGAAATTCTTCATGAGGCATTCTCTAGGGTTTCAGGGGAGGCTGATGAAGCAATCAAGGATCAAGTTAAAACTTGTGACCCTATTAGAGTTTCTGTTGCAGTGGAGTCTGTGCTATTTCGGAACTGGGGCCATCTTAATGGAGCTCGGAAGATCAAGTACAGGTCCTTGATGTTTAACGTCAAGGATCCGAAAAACCCAGATTTCCGAAGAAGAGTTCTGGTCGGAGAATACTCGCCGGAGCGGCTCGGGGACATGAAAACAGCAGAAATGGCTAGTGACAAGAGGAAGAAGGAGAACGAGACGATCAAAAGGAAAGCTTTGTTTGAGTGTGAGCGTGGACAGAAACCAAAAGCCACAACTGATCAGTTCAAGTGTGGGAAATGTGGGAAGAGAGAGAGCATCTTTCACCAGATGCAGACTCGGAGTGCTGATGAACCTATGACTACATATGTTACCTGCGTTTCATGCAATCACCATTGGAAGTTCTGTTAG 1386 0.4401 MEKELIQLFGAVKKAADAAAASTACEVEESQCLDAFKMPKKFPVNYEILVATQVGKHLRVLTKHPRKKIQTFAMDIVEIWKAIIIKGISPKKKVNVEKTHWNGTSNSGKGNTKDSTMEKELIQLYEAVTKAANAAATSATGEVEENRCLDVLKLLKKFPVNYQILTSTQVLKPEKTDGNGTPSSEQADSNGTVSAENVEVEKVGKTRVKRLKLKKTVVDIAKAEKTDRNIEPSTSENVKEKDCNVVTSEKTVSVANIAKNEEKQVSGILKKGSSSSPDSPLKQENMIKTNDEKRDKMREILHEAFSRVSGEADEAIKDQVKTCDPIRVSVAVESVLFRNWGHLNGARKIKYRSLMFNVKDPKNPDFRRRVLVGEYSPERLGDMKTAEMASDKRKKENETIKRKALFECERGQKPKATTDQFKCGKCGKRESIFHQMQTRSADEPMTTYVTCVSCNHHWKFC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3400g00001 461 CDD Zn-ribbon_TFIIS 414 460 - -
Pral3400g00001 461 MobiDBLite consensus disorder prediction 172 197 - -
Pral3400g00001 461 SMART Cys4_2 421 460 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3400g00001 461 Pfam TFIIS helical bundle-like domain 40 84 IPR017923 -
Pral3400g00001 461 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 118 172 IPR035441 -
Pral3400g00001 461 SMART mid_6 295 399 IPR003618 GO:0006351
Pral3400g00001 461 Pfam Transcription factor S-II (TFIIS) 421 459 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3400g00001 461 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 25 92 IPR035441 -
Pral3400g00001 461 ProSiteProfiles Zinc finger TFIIS-type profile. 419 459 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3400g00001 461 Gene3D - 274 389 IPR036575 GO:0006351
Pral3400g00001 461 ProSiteProfiles TFIIS N-terminal domain profile. 10 87 IPR017923 -
Pral3400g00001 461 SMART TFS2_5 8 86 IPR003617 GO:0005634
Pral3400g00001 461 SUPERFAMILY Zinc beta-ribbon 400 459 - -
Pral3400g00001 461 ProSitePatterns Zinc finger TFIIS-type signature. 423 458 IPR001222 GO:0003676|GO:0006351|GO:0008270
Pral3400g00001 461 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Pral3400g00001 461 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 108 173 IPR035441 -
Pral3400g00001 461 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 461 - -
Pral3400g00001 461 Pfam Transcription factor S-II (TFIIS), central domain 289 407 IPR003618 GO:0006351
Pral3400g00001 461 SUPERFAMILY Elongation factor TFIIS domain 2 283 391 IPR036575 GO:0006351
Pral3400g00001 461 Gene3D - 390 461 - -
Pral3400g00001 461 ProSiteProfiles TFIIS central domain profile. 293 416 IPR003618 GO:0006351
Pral3400g00001 461 PIRSF TFIIS 115 461 IPR035100 -
Pral3400g00001 461 PIRSF TFIIS 2 123 IPR035100 -
Pral3400g00001 461 MobiDBLite consensus disorder prediction 172 196 - -
Pral3400g00001 461 CDD TFIIS_I 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3400g00001 Pral-Chr3400 19284 21701 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Pral3400g00001 TFIIS_M 4.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3400g00001 K03145 - qsa:O6P43_014856 380.948