Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00016 ATGGTGATGCGGAGGCATAAGATTATACCATTTCCAAAGACTACCGACTTAAACTTACCTCTTTTCAACTTTAATGTGTTGCTCCAGCATTCCTCTTTCCTTCTTTATGTGCAGCTCAACCGCCCATGCAACCAGCTTCAACTCAATAATACTAAATCCATCTGCAAGACCAACACTACAAGCGCAGAACAAGAAGCAGAGCCGCTTGATTATAGATATTCATGTTTGGACCGAAGTGGTGTGGCTCCATCAAGCAAATACCAAAGCAATCTCAAGAATCTCATATCTTCACTTTTTTCTGATTCTTCAACCGGCAATGGATTTGGTAACAGAACTGCAGGTAGTGATAAAGATAAGGTGTATGGGCTTTATCTTTGTAGAGGGGATGTGAATTCAAGTTTATGTCATTCTTGTGTTCAAGATTCTAGCAGATTGATCCAACAGCATTGTCCCAATAATGCTACTGCAGTTTTATGGCACCCATTTTGCCTTCTCAGATATTCCAACGAGGATTTCTTTGGCAATCTAACTCTGAGGCCTCGGATTCCCATGTTTGATGCAACACAAAACTTAACGAGTGCAGGAGAGTTCGACAGTGACGCTAGGATTCTGATGAACGGTTTGATACAGACAGGTTCAGAGACAAACCTGATGTTTGGGACACACGTGTTCAACATAAATGGCACCCAGAAAAGGTATGGTTGGGTTCAGTGCAGCAAAGACATAACTAGTGAAGAGTGCAGAACATGTCTGAGCAATATGCTTGAAGAAGTTGAAAATTGCTGTGAAGGCAAGAGGGTTTGGAGAATCTTTTCTCCTAGCTGTATTGTTATGTATGAGACTCAGCCTTTCTTTGTAAATGATACTGGGTTGATTGCTCCAACGCCCCAGCTAGGTGAGGAAAGTAGTAACAGGTCAATGCTTAGAGTTATCGTTGTTATAAGTGTAGTAGTAGTACTAGCTCTACTGGTTTTCTGCACAATCTACTTCAGGTTCTTGAGAAAGAAAAAAGACAAACAAGCAGTGCAGGAAGATGGGCTAAATCCAGTATTTTCTCAGGATCAAACTGACGAAGAGAATTCTATGAGTATTGACCTTTCGATAATGTCCCTGAAAACTATTCTTCAAACTACTTGTAACTTTTCTGAAGAATGTAAATTGGGAAAAGGTGGATTTGGCTCTGTATACAAGGGTGTTTTACCTGATAGGAAGGAAATAGCAGTAAAGAGGCTGTTAAAAACTTCAGGGCAAGGATTAAAAGAGTTAAAGAATGAAGTAATATTGATTGCAAAATTGCAGCATCGGAACCTTATGAGATTGTTAGCTTGCTGCATTGAGCAAAATGAAAAGCTACTTGTTTATGAGTACATGCCTAATTCTAGCCTCGATTTTCACCTCTTCGATATGGAGAAGCATTCCCAGTTGGAATGGAAGTTGCGATTGAGCATCATTAATGGAACTGCAAAAGGACTTTTGTATCTCCATGAAGACTCTAGACTAAGGGTTATTCATAGGGATCTAAAAGCTAGTAATATACTGTTAGACCATGAAATGAATCCAAAAATTTCAGATTTTGGATTACCAAGAGTTTTTGGAGGCAACCAAAGGCAAGCAAATACTATCAGAGTTGTGGGTACCTATGGTTACATGGCTCCAGAATATGCTATGGAAGGCTTGTTTTCAATAAAATCATATGTATTTAGCTTTGGTGTTCTCCTACTAGAAATCATTAGTGGAAAAAAGAATGGTAGATTCTACCTTTCAGAGCACGGTCAAAGCCTTCTCATATATGCATGGAGGCTCGGGTGTGAAGGGAAGGGCTTGGACCTAATGGATCCAATATTAGAAAGGTCATTTGAACCTTCTGAAGTTCTCAAGCGCATCCAAATCGGCCTCTTATGTGTGCAAGAAGATGTAGCAGACAGACCAACAATGTCAAGTGTAGTACTTATGCTTGCAAGTGACTCAGTGAACCTTCCAAGGCCAACACAACCTGCATTGTCTGTTGGAAGAGGTTTCACGGAGAAAGAGCCTTCATCAAAAAATACTACCCATGACTCCATCAATGGAGTAACTATTTCTGAAGTTTTAGCTAGATGA 2100 0.4005 MVMRRHKIIPFPKTTDLNLPLFNFNVLLQHSSFLLYVQLNRPCNQLQLNNTKSICKTNTTSAEQEAEPLDYRYSCLDRSGVAPSSKYQSNLKNLISSLFSDSSTGNGFGNRTAGSDKDKVYGLYLCRGDVNSSLCHSCVQDSSRLIQQHCPNNATAVLWHPFCLLRYSNEDFFGNLTLRPRIPMFDATQNLTSAGEFDSDARILMNGLIQTGSETNLMFGTHVFNINGTQKRYGWVQCSKDITSEECRTCLSNMLEEVENCCEGKRVWRIFSPSCIVMYETQPFFVNDTGLIAPTPQLGEESSNRSMLRVIVVISVVVVLALLVFCTIYFRFLRKKKDKQAVQEDGLNPVFSQDQTDEENSMSIDLSIMSLKTILQTTCNFSEECKLGKGGFGSVYKGVLPDRKEIAVKRLLKTSGQGLKELKNEVILIAKLQHRNLMRLLACCIEQNEKLLVYEYMPNSSLDFHLFDMEKHSQLEWKLRLSIINGTAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLPRVFGGNQRQANTIRVVGTYGYMAPEYAMEGLFSIKSYVFSFGVLLLEIISGKKNGRFYLSEHGQSLLIYAWRLGCEGKGLDLMDPILERSFEPSEVLKRIQIGLLCVQEDVADRPTMSSVVLMLASDSVNLPRPTQPALSVGRGFTEKEPSSKNTTHDSINGVTISEVLAR 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00016 699 CDD STKc_IRAK 387 652 - -
Pral3398g00016 699 Gene3D - 69 172 IPR038408 -
Pral3398g00016 699 Gene3D - 183 284 IPR038408 -
Pral3398g00016 699 Gene3D Transferase(Phosphotransferase) domain 1 457 659 - -
Pral3398g00016 699 ProSiteProfiles Protein kinase domain profile. 381 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3398g00016 699 FunFam Cysteine-rich receptor-like protein kinase 10 182 284 - -
Pral3398g00016 699 Gene3D Phosphorylase Kinase; domain 1 345 456 - -
Pral3398g00016 699 FunFam Cysteine-rich receptor-like protein kinase 28 71 171 - -
Pral3398g00016 699 ProSiteProfiles Gnk2-homologous domain profile. 69 172 IPR002902 -
Pral3398g00016 699 ProSiteProfiles Gnk2-homologous domain profile. 179 284 IPR002902 -
Pral3398g00016 699 FunFam Liguleless narrow1 457 660 - -
Pral3398g00016 699 Pfam Protein tyrosine and serine/threonine kinase 385 597 IPR001245 GO:0004672|GO:0006468
Pral3398g00016 699 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Pral3398g00016 699 FunFam Cysteine-rich receptor-like protein kinase 10 343 456 - -
Pral3398g00016 699 MobiDBLite consensus disorder prediction 667 688 - -
Pral3398g00016 699 Pfam Salt stress response/antifungal 189 281 IPR002902 -
Pral3398g00016 699 Pfam Salt stress response/antifungal 82 169 IPR002902 -
Pral3398g00016 699 SMART serkin_6 381 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral3398g00016 699 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 694 - -
Pral3398g00016 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Pral3398g00016 699 SUPERFAMILY Protein kinase-like (PK-like) 364 665 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00016 Pral-Chr3398 328253 332945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3398g00016 66 686 Receptor kinase-like Gene Family AT4G05200 39.437 2.44e-158 472
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral3398g00016 PK_Tyr_Ser-Thr 1.7e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00016 - - gmx:100798691 960.288