Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00013 ATGTATAGAATAATATCTACGCCTGCCCATAAATTCCGCCAATTCGGGCGACTCCAAGCCAAGCCCTCCGGCGCCGCCACCGACGAGGAACACGCCTACCTCATCCTATGGCGTCATCAGATCCTCGACCCCGACAGCGACATCGTTGCACGTTGGAACAGGATCTTCCTCGTTACCAGTCTCATTGCGCTTTTCATCGACCCCCTTTACTTATATCTGCCCAACATCGGAGGCCCCGGTTGTTTACAAACCAGTACAGGATTGAGCATCATCGTTACTCTTCTACGCTCTTTCTCTGACCTTTTCTATGCGCTCCACATGATCATGAAATTTCGGACAGCCTTCGTGGCCCCAAATTCCAGGATTTTTGGTCGGGGTGAGCTGGTTACCGATGCCCGAGAAATTGCCAGACGCTACTTGAGGTCGGATTTTGTTATCGACCTTGCCGCAACCCTTCCACTACCCCAGATTGTCATTTGGTTGGTGGTTCCATCATCCTCGGCTGACCACGCCCACATCACTCTTGCTCTTTTCGTGCTTATTCAATATGTTCCTAGACTGTTTCTTATCTTCCCACTAAACAAGCGTATTGTCAAAACCTCTGGTGTTGTTGCCAAGACTCCATGGACTGGAGCTGCATATAATCTTCTACTTTACATGCTAGCCAGTCACGTTGTAGGAGCAACTTGGTACTTATCCGCAATAGCACGACAATTAAACTGTTGGACTGAAGAGTGCAAAGCTGAGAACGAATTACAAACCCTGTCTTGCCTTGTAAGTTATCTTGATTGCGGGACTTTGGACAACCCCGATAGGCAATACTGGCTAAATGTCACCAATGTTGTTAAGAGTTGCGATGTAAAGAGCGGAAATAACAAATATTCGTTTGGGATGTTTCAAGATGCTTTCAGGAAGGCTGTTGCTACTGGCAGTTTCAGTGAGAGATTTTTCTATTGTCTTTGGTGGGGTATTAGAAATTTAAGCTCATACGGACAAAACTTGGACACCACTGTATTTATTGGTGAAACACTATTTTCCATCATGCTATGCGTTGTTGGATTAGTTCTCTTTGCACTTTTGATAGGAAACATGCAGACATATTTAGAGTCAATGTCAGCAAGACTTGAAGAATGGAGGATTAGGAAGAGAGATACTGAGGAATGGATGAGACACCGCCAGTTACCTCAAGATTTGCAAGAGCGTGTTCGTCGCTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTGATGAGAAATCCATATTGCTTTCATTACCTTTGGATCTTCGTCGTGAAATTCAACGCCACTTGTGTCTCGCTCTTGTTCGACGCGTTCCCTTCTTCTCACAGATGGATGATCAACTCCTTGATGCCATTTGTGAACACCTTGTGTCGTCCCTAAGCACTGAAGGAACCTGCATTTTTCGAGAGGGTGATCCGGTGAATGAAATGGTGTTCATCATTAGAGGCCAACTAGAAAGCTCCACGACTAATGGTGGAAGGTCCGGGTTCTTTAATTCCATTACCCTCAGACCTGGAGACTTTTGCGGCGAGGAACTATTGACATGGGCTTTAATGCCAAACTCCAGCTCGAACCTTCCTTCTTCAACCCGAACTGTTAGGGCTCTTACTGAAGTCGAAGCTTTCGCATTACAGGCAGATGATCTCAAAGTTGTGGCGGCTCAGTTCAAGCGCCTTCATAGTAAGAAACTTCAGCATGCTTTTAGGTATTACTCCCATCAATGGAGGGCTTGGGCAGCTTGCATAATAGAGGCTTCTTGGAGAAGGTATAAGAAACGCAAGGCATCTAGGGAGTTATCCCTAAGAGAGGGCCTCTACTTTATTGCAAAACCAGAGGGAGAAACTAGTTATGGCGACCTGCTTGAGTTGGAGGGCTCATCAGGGGACGCCATAATTGGGACTCAGGCTCTTGCTGCTACAGTTATGGCTTCCAAGTTTGCTGCAAATGCAAAGAAAGGGACTATAGGCCATAAAGCAGTTCAAGGCAGTGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTCTCTGTGCTATAG 2064 0.4603 MYRIISTPAHKFRQFGRLQAKPSGAATDEEHAYLILWRHQILDPDSDIVARWNRIFLVTSLIALFIDPLYLYLPNIGGPGCLQTSTGLSIIVTLLRSFSDLFYALHMIMKFRTAFVAPNSRIFGRGELVTDAREIARRYLRSDFVIDLAATLPLPQIVIWLVVPSSSADHAHITLALFVLIQYVPRLFLIFPLNKRIVKTSGVVAKTPWTGAAYNLLLYMLASHVVGATWYLSAIARQLNCWTEECKAENELQTLSCLVSYLDCGTLDNPDRQYWLNVTNVVKSCDVKSGNNKYSFGMFQDAFRKAVATGSFSERFFYCLWWGIRNLSSYGQNLDTTVFIGETLFSIMLCVVGLVLFALLIGNMQTYLESMSARLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFVQYKWLATRGVDEKSILLSLPLDLRREIQRHLCLALVRRVPFFSQMDDQLLDAICEHLVSSLSTEGTCIFREGDPVNEMVFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSSSNLPSSTRTVRALTEVEAFALQADDLKVVAAQFKRLHSKKLQHAFRYYSHQWRAWAACIIEASWRRYKKRKASRELSLREGLYFIAKPEGETSYGDLLELEGSSGDAIIGTQALAATVMASKFAANAKKGTIGHKAVQGSDPVPQLFKPDEPDFSVL 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00013 687 SUPERFAMILY Voltage-gated potassium channels 43 369 - -
Pral3398g00013 687 Gene3D Helix hairpin bin 371 438 - -
Pral3398g00013 687 SUPERFAMILY cAMP-binding domain-like 376 572 IPR018490 -
Pral3398g00013 687 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 25 684 - -
Pral3398g00013 687 CDD CAP_ED 447 578 IPR000595 -
Pral3398g00013 687 SMART cnmp_10 447 578 IPR000595 -
Pral3398g00013 687 ProSiteProfiles cAMP/cGMP binding motif profile. 447 577 IPR000595 -
Pral3398g00013 687 Pfam Ion transport protein 52 374 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral3398g00013 687 Gene3D - 55 370 - -
Pral3398g00013 687 Gene3D Jelly Rolls 445 565 IPR014710 -
Pral3398g00013 687 FunFam Cyclic nucleotide-gated ion channel 1 445 563 - -
Pral3398g00013 687 FunFam Cyclic nucleotide-gated ion channel 1 374 438 - -
Pral3398g00013 687 Pfam Cyclic nucleotide-binding domain 470 558 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00013 Pral-Chr3398 259175 262040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3398g00013 33 686 Ion Channels AT5G14870 65.685 0.0 941
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00013 K05391 - gmx:100802812 1062.37