Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00008 ATGCTGCTTCTCCTTCCCAGTTTGCTCACTCTTGGAGATACATTCCTTTCAAACTTTGCTTCGGTGGGCGTCCGGTACCAGGGAGTGAAGGTGGCCATGGGGCAAGTTTGCGAGTCGCGATGGAGATTCAGGGGTCGACAATCCAAGGGCAGAGTGTGGTTGGGTACTTTTGACACAGTGGAGGAAACAGCCAGGGCTTATGACGAGGCCCGAGCTGCTTGCTGCATGAGAGGCTCATTCGCATTTCTCAGCTTCCCAAATGAATATCGCCCTGGTTCTAACATTGCAACGTCGTCTTCTTCAGCTCCTTTGAGGAGCCGCCATGAAGTGCTCAAGTACTTGGATGATAAACTCTTGGAGGAGCTTCTGGACTGA 375 0.52 MLLLLPSLLTLGDTFLSNFASVGVRYQGVKVAMGQVCESRWRFRGRQSKGRVWLGTFDTVEETARAYDEARAACCMRGSFAFLSFPNEYRPGSNIATSSSSAPLRSRHEVLKYLDDKLLEELLD 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00008 124 Pfam AP2 domain 36 72 IPR001471 GO:0003700|GO:0006355
Pral3398g00008 124 PANTHER DNA-BINDING DOMAIN 49 97 IPR044808 GO:0003700|GO:0009873
Pral3398g00008 124 CDD AP2 40 87 IPR001471 GO:0003700|GO:0006355
Pral3398g00008 124 Gene3D AP2/ERF domain 24 87 IPR036955 GO:0003700|GO:0006355
Pral3398g00008 124 SMART rav1_2 25 92 IPR001471 GO:0003700|GO:0006355
Pral3398g00008 124 ProSiteProfiles AP2/ERF domain profile. 25 86 IPR001471 GO:0003700|GO:0006355
Pral3398g00008 124 SUPERFAMILY DNA-binding domain 39 87 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00008 Pral-Chr3398 130595 133845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3398g00008 50 124 AP2-EREBP Transcription Factor Family AT3G23230 44.086 3.55e-15 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3398g00008 AP2 9.1e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00008 - - pcin:129299756 73.1738