Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00007 ATGGTGGGCGTCCGGTACCAGGGAGTGAAGGTGGCCATGGGGCAAGTTTGCGAGTCGCGATGGAGATTCAGGGGTCGACAATCCAAGGGCAGAGTGTGGTTGGGTACTTTTGACACAGTGGAGGAAACAGCCAGGGCTTATGACGAGGCCCGAGCTGCTTGCTGCATGAGAGGCTCATTCGCATTTCTCAGCTTCCCAAATGAATATCGCCCTGGTTCTAACATTGCAACGTCGTCTTCTTCAGCTCCTTTGAGGAGCCGCCATGAAGTGCTCAAGTACTTGGATGATAAACTCTTGGAGGAGCTTCTGGACTGA 315 0.5333 MVGVRYQGVKVAMGQVCESRWRFRGRQSKGRVWLGTFDTVEETARAYDEARAACCMRGSFAFLSFPNEYRPGSNIATSSSSAPLRSRHEVLKYLDDKLLEELLD 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00007 104 PANTHER DNA-BINDING DOMAIN 29 77 IPR044808 GO:0003700|GO:0009873
Pral3398g00007 104 SMART rav1_2 5 72 IPR001471 GO:0003700|GO:0006355
Pral3398g00007 104 SUPERFAMILY DNA-binding domain 19 67 IPR016177 GO:0003677
Pral3398g00007 104 CDD AP2 20 67 IPR001471 GO:0003700|GO:0006355
Pral3398g00007 104 Gene3D AP2/ERF domain 4 67 IPR036955 GO:0003700|GO:0006355
Pral3398g00007 104 Pfam AP2 domain 16 52 IPR001471 GO:0003700|GO:0006355
Pral3398g00007 104 ProSiteProfiles AP2/ERF domain profile. 5 66 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00007 Pral-Chr3398 130594 133845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3398g00007 30 104 AP2-EREBP Transcription Factor Family AT3G23230 44.086 1.12e-15 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3398g00007 AP2 6.2e-07 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00007 - - pcin:129299756 73.1738