Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00006 ATGGTGGAGCAACGTGGAGAAGTTGATGATAACAATTCCACAGAAGACTGGTTCTTGCGAGCGCAAGAACTAGTACCCTTTGCTGTTAACAAGGCCAAAGAGGTCAAAGGCTTTTCTGGTAGGTGGAAAGTGATTGTTTCAAAGATAGAACAGATCCCATCATGCTTATCAGACTTGTCTAGCCATCCGTGCTTCTCCAAGAATTCTCTCTGTAAGGAGCAATTGCAGGCTGTGTCGAAGACCCTCGAGGAAGCCATCAATTTATCCGAGTTATGCGTGAAGGAGAGGTACGAAGGTAAGCTTCGAATGCAGAGTGATCTCGATGCTTTATCTGGGAAATTGGATTTGAATTTACGAGATTGTAGGCTATTGATCAAGTCTGGTGTCCTTGGTGAGTCTGCTTTTCCATTGGGTATGTCTGATGATGTGAAACAAGAGAATGAGGTAAGAGAATTGTTTGCGCGCCTTCAGATTGGTGACTTGGAGGCAAAGAACAGAGCTATAGACAATCTTGTTGAAGCAATGAAGGAAGAAGAAAAGAGTGTTATGGCTGTTCTAGGAAGAATCCAAATGGCTTCTTTAGTTCAATTGTTAACGGCTACTTGTACTAGGATAAGGGAAAAGGCTGTTACTGTCATATGTTGTCTTGCAGAATCTGGGAACTGTGAGAATTGGCTTGTCTCTGAAGGTGTCTTGCCGCTTCTTATTCGGCTTATTGAATCTGGTGGGGCTATTGGAAAAGAGAAGGCTGCAATATGTCTCCAAAGGCTGTCCATGTCTGAGGAATCAGCCAGAGAAATCGTCAGAAATGGCGGCGTTGGACCACTAATGGAGCTCTGTCATAATGGGGATTCCGTGTCCCAATCTGCTTCTGCTTGTTCTTTGAAGAACATATCGGTTGTTCCTGAATTGAGACAAGCTTTGGCTCAAGAAGGAATTGTGAAAACCATGATCAATCTCCTTGATCATGGAATTCTAGTGGGGAGCAAGGAATATGCTTCAGAATGCTTGAAGAATCTCACATCAAGCAATGAGAACCTGAGAAGGTCAGTTATATCAGAAGGGGGAGCTAGGAGCCTTCTTGCTTATCTTGATGCTCCAATCCCTCAAGAATCAGCTGTCACTGCATTGAGGAATCTAGTCGGATCAATCGGTGAGCGAGATTTGATCTCATTAGGCCTCCTTCCTCGTTTGATCCACGTGCTAAACTCGAGATCTTCTGGAGCTCAGCAGGCTGCTGTGTCAGCAATATGTAGAGTTTTGATCTCTGCAGAAATGAAGAAAATGGTGGCTGATGCTGGATTCATCCCACTGCTCATCAACATGCTGGAAGCTGAATCGAACAGCGCAAGAGAATTTGCAGCGCAAGCCATCGGGAGCTTGATGACAGTAACACAGAACCGCAGGGAAGTGAGAAGGAATGATAAGAGTGTGCCAAATTTGGTTCAGTTGCTTGATCCAAGCCCACACAATAGTGCAAAGAAATATGCAATTCCTTGTTTATGTTCACTTTCTTCAAGCAGGAAATGTAAGAGGCTGATGATTGCTTATGGGGCAGTTGGATACCTGAAGAAGCTTAAAGAGATGGACATTCCAGGAGCTAAAATGCTACTTGACAGGTTGGAAAGAGGGAAATTGAGAAGCTTATTTAGCAGAAAATGA 1662 0.4398 MVEQRGEVDDNNSTEDWFLRAQELVPFAVNKAKEVKGFSGRWKVIVSKIEQIPSCLSDLSSHPCFSKNSLCKEQLQAVSKTLEEAINLSELCVKERYEGKLRMQSDLDALSGKLDLNLRDCRLLIKSGVLGESAFPLGMSDDVKQENEVRELFARLQIGDLEAKNRAIDNLVEAMKEEEKSVMAVLGRIQMASLVQLLTATCTRIREKAVTVICCLAESGNCENWLVSEGVLPLLIRLIESGGAIGKEKAAICLQRLSMSEESAREIVRNGGVGPLMELCHNGDSVSQSASACSLKNISVVPELRQALAQEGIVKTMINLLDHGILVGSKEYASECLKNLTSSNENLRRSVISEGGARSLLAYLDAPIPQESAVTALRNLVGSIGERDLISLGLLPRLIHVLNSRSSGAQQAAVSAICRVLISAEMKKMVADAGFIPLLINMLEAESNSAREFAAQAIGSLMTVTQNRREVRRNDKSVPNLVQLLDPSPHNSAKKYAIPCLCSLSSSRKCKRLMIAYGAVGYLKKLKEMDIPGAKMLLDRLERGKLRSLFSRK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00006 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 272 IPR000225 GO:0005515
Pral3398g00006 553 SUPERFAMILY ARM repeat 190 527 IPR016024 -
Pral3398g00006 553 Gene3D - 146 537 IPR011989 -
Pral3398g00006 553 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 7 551 - -
Pral3398g00006 553 Coils Coil 158 181 - -
Pral3398g00006 553 SMART arm_5 423 463 IPR000225 GO:0005515
Pral3398g00006 553 SMART arm_5 301 342 IPR000225 GO:0005515
Pral3398g00006 553 SMART arm_5 260 300 IPR000225 GO:0005515
Pral3398g00006 553 SMART arm_5 465 506 IPR000225 GO:0005515
Pral3398g00006 553 SMART arm_5 383 422 IPR000225 GO:0005515
Pral3398g00006 553 SMART arm_5 343 382 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00006 Pral-Chr3398 73866 76778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3398g00006 398 537 U-box Gene Family AT2G23140 36.170 3.08e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00006 - - gmx:100789140 786.178