Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral3398g00005 ATGGCAGGAGCTGAATCAAACAGGCCCATCACAAAGATCAGAAGGTTCATAGGGGTCAGGCAAAGGCCTTCAGGAAGGTGGGTGGCTGAGATCAAAGACTCATCTCAACACGTGAGGCTATGGCTGGGAACCTATGACACCCCGGAGGAAGCAGCTCGGGCTTACGACGAAGCGGCTCGGACCCTGCGCGGCGAAAACGCCCGAACCAACTTCGCACTGCCAGCTAGCCAATCAGCCACGTGCGATCAGTCTGGGTGCGAAGCCAAGCATGGGGTAAATTTTGCTTCTTTGAAAGCTAAGCTGAGCAAGAATCTTCAGAGTATAATGACCAGATCAGGAAACGAAACGACGTCGTTCAAAGGCAGAGTGAGTGACCATATCACTTTTGCTAGCATATTTCATCCCAAGAGGACTTTCCTGCCGTACCAAATCTCTTCACTTGATACAATGAAGAACATGGATTGTATGGTTCAGCCTAGTATTATAGTACCTCCTGCTAAAACTGATAACGATCGGCCTTGCGGTTCTTGGGAAAATTCCTGTGCCTCTGATTGTGGCTGCTCCGATCATGGGGTCGGGCTCCGGCAAACTGCAACGGACTCCTCGGACGGGTCGGATTCTGGGGAGGTTATTAGTACTTTGGGGGATCAAGGGTTTATGGAGCAAGTGATGGGGTGGATCAATAGCAGCCCTGAGGAAGGTTCAAGGAGTAAGAGGCATAAGGTGTCATCTTCAGTATTTGTGCCTCCAACTTTTAGTGGGTCTCCGTGTTGTGTTAGTGGTAGTTGTGGCTCTCCTTGTTATGGTTATGGTTCTCCATATGTATGA 828 0.4988 MAGAESNRPITKIRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARTLRGENARTNFALPASQSATCDQSGCEAKHGVNFASLKAKLSKNLQSIMTRSGNETTSFKGRVSDHITFASIFHPKRTFLPYQISSLDTMKNMDCMVQPSIIVPPAKTDNDRPCGSWENSCASDCGCSDHGVGLRQTATDSSDGSDSGEVISTLGDQGFMEQVMGWINSSPEEGSRSKRHKVSSSVFVPPTFSGSPCCVSGSCGSPCYGYGSPYV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral3398g00005 275 Pfam AP2 domain 15 64 IPR001471 GO:0003700|GO:0006355
Pral3398g00005 275 SUPERFAMILY DNA-binding domain 16 72 IPR016177 GO:0003677
Pral3398g00005 275 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Pral3398g00005 275 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Pral3398g00005 275 PRINTS Ethylene responsive element binding protein signature 38 54 IPR001471 GO:0003700|GO:0006355
Pral3398g00005 275 ProSiteProfiles AP2/ERF domain profile. 15 72 IPR001471 GO:0003700|GO:0006355
Pral3398g00005 275 SMART rav1_2 15 78 IPR001471 GO:0003700|GO:0006355
Pral3398g00005 275 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 111 - -
Pral3398g00005 275 FunFam ethylene-responsive transcription factor RAP2-11 4 73 - -
Pral3398g00005 275 Gene3D AP2/ERF domain 14 73 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral3398g00005 Pral-Chr3398 64030 64857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral3398g00005 15 72 AP2-EREBP Transcription Factor Family AT5G19790 74.138 7.60e-26 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral3398g00005 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral3398g00005 - K09286 gmx:100799444 251.906